RNA id: trnat-ugu_8



Basic Information


Item Value
RNA id trnat-ugu_8
length 73
RNA type tRNA
GC content 0.58
exon number 1
gene id trnat-ugu_8
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27621311 ~ 27621383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GGCTCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAATCCTCGCTGGGGCCT

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU85492 lncRNA upstream 61884 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 62201 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA upstream 62209 27556204 ~ 27559102 (+) False LOC113540592
TU85493 lncRNA upstream 62298 27556204 ~ 27559013 (+) False LOC113540592
TU85494 lncRNA upstream 65605 27553127 ~ 27555706 (+) True G72118
TU85626 lncRNA downstream 390361 28011744 ~ 28012459 (+) True G72236
TU85674 lncRNA downstream 493068 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 681468 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 695021 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 847565 28468948 ~ 28471765 (+) True G72336
XM_034304070.1 mRNA upstream 39289 27562149 ~ 27582022 (+) True dvl3a
XM_034303993.1 mRNA upstream 75182 27534676 ~ 27546129 (+) True ap2m1a
XM_026936183.2 mRNA upstream 104107 27509850 ~ 27517204 (+) True si:ch211-252f13.5
XM_026935807.2 mRNA upstream 113112 27495848 ~ 27508199 (+) True abi1b
XM_026936880.2 mRNA downstream 7065 27628448 ~ 27639961 (+) True prtfdc1b
XM_034303530.1 mRNA downstream 27431 27648814 ~ 27698656 (+) True arhgap21b
XM_034303531.1 mRNA downstream 27431 27648814 ~ 27698656 (+) False arhgap21b
XM_034303532.1 mRNA downstream 27431 27648814 ~ 27698656 (+) False arhgap21b
XM_034303535.1 mRNA downstream 27431 27648814 ~ 27698656 (+) False arhgap21b
trnat-ugu_6 other upstream 634 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 63409 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 64663 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 131986 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404108.2 other upstream 508057 27113148 ~ 27113254 (+) True LOC113540738
TU86406 other downstream 1252973 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1998610 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 3124748 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 3124748 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 3440347 31061730 ~ 31097888 (+) False spsb4a