Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC113541988 |
| length | 1040 |
| RNA type | V_segment |
| GC content | 0.50 |
| exon number | 4 |
| gene id | LOC113541988 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 29679411 ~ 29681726 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K06553 | VPREB, CD179a; pre-B lymphocyte gene |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU64755 | lncRNA | downstream | 40061 | 29631021 ~ 29639350 (-) | False | LOC113542002 |
| TU64754 | lncRNA | downstream | 40061 | 29638586 ~ 29639350 (-) | False | LOC113542002 |
| XR_003404243.2 | lncRNA | downstream | 40072 | 29631001 ~ 29639339 (-) | True | LOC113542002 |
| XR_003404254.2 | lncRNA | downstream | 409391 | 29269096 ~ 29270020 (-) | True | LOC113542069 |
| TU64653 | lncRNA | downstream | 415982 | 29262760 ~ 29263429 (-) | True | G54855 |
| TU64791 | lncRNA | upstream | 24017 | 29705743 ~ 29709036 (-) | True | G54977 |
| TU64885 | lncRNA | upstream | 191322 | 29873048 ~ 29876760 (-) | False | LOC113542120 |
| TU64886 | lncRNA | upstream | 191322 | 29873048 ~ 29876760 (-) | False | LOC113542120 |
| XR_003404262.2 | lncRNA | upstream | 191334 | 29873060 ~ 29876760 (-) | False | LOC113542120 |
| XR_004577796.1 | lncRNA | upstream | 191334 | 29873060 ~ 29876746 (-) | False | LOC113542120 |
| XM_026939311.2 | mRNA | downstream | 1059386 | 28610623 ~ 28620025 (-) | True | flrt3 |
| XM_026939312.2 | mRNA | downstream | 1158582 | 28515778 ~ 28520829 (-) | True | ephx5 |
| XM_026939483.2 | mRNA | downstream | 1174134 | 28504100 ~ 28505277 (-) | True | LOC113542138 |
| XM_026939117.2 | mRNA | downstream | 1178013 | 28499606 ~ 28501398 (-) | True | LOC113541930 |
| XM_026939251.2 | mRNA | downstream | 1182809 | 28494642 ~ 28496602 (-) | True | LOC113542015 |
| XM_034301980.1 | mRNA | upstream | 819 | 29682545 ~ 29684864 (-) | True | LOC113541985 |
| XM_026939190.2 | mRNA | upstream | 5004 | 29686730 ~ 29695063 (-) | True | zfyve21 |
| XM_026939191.2 | mRNA | upstream | 5004 | 29686730 ~ 29695056 (-) | False | zfyve21 |
| XM_034303164.1 | mRNA | upstream | 91659 | 29773385 ~ 29779069 (-) | True | dact2 |
| XM_026939507.2 | mRNA | upstream | 100537 | 29782263 ~ 29788784 (-) | True | eif3s6ip |
| trnae-cuc_11 | other | downstream | 477408 | 29201932 ~ 29202003 (-) | True | trnae-cuc_11 |
| TU64047 | other | downstream | 1244000 | 28433220 ~ 28435411 (-) | True | G54269 |
| TU63465 | other | downstream | 2138112 | 27537776 ~ 27541299 (-) | False | zgc:163080 |
| XR_003404274.1 | other | downstream | 3769292 | 25910018 ~ 25910119 (-) | True | LOC113542183 |
| XR_004577835.1 | other | downstream | 4943524 | 24682246 ~ 24735887 (-) | False | herc4 |
| TU65059 | other | upstream | 430105 | 30111831 ~ 30122655 (-) | True | G55209 |
| TU65057 | other | upstream | 430308 | 30112034 ~ 30122822 (-) | False | G55209 |
| TU65060 | other | upstream | 430596 | 30112322 ~ 30122655 (-) | False | G55209 |
| XR_004577811.1 | other | upstream | 471182 | 30152908 ~ 30161223 (-) | True | khdrbs1a |
| XR_004577810.1 | other | upstream | 471761 | 30153487 ~ 30161223 (-) | False | khdrbs1a |
