RNA id: TU45305


Basic Information

Item Value
RNA id TU45305
length 233
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G38273
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 108773 ~ 109005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaactattactgatcaggagtttgatgtactgtgtttaacagaaacgtggattaaaccaaacaagtttgtagcattaaatgaagctagtcctcccgggtacagttacatacatcagccccgtctaactggcagaggaggaggcgtcgcagtcatttataatgataatctagccgtcacacaaaaacctagtcataaattcaacgcatttgaagttctttattctaacataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45265 lncRNA downstream 51015 56882 ~ 57758 (-) False G38240
TU45307 lncRNA upstream 848 109853 ~ 110099 (-) True G38275
TU45309 lncRNA upstream 2813 111818 ~ 112051 (-) True G38277
TU45443 lncRNA upstream 107249 216254 ~ 272915 (-) True G38385
XR_004577800.1 lncRNA upstream 125964 234969 ~ 236237 (-) True LOC117596827
TU45464 lncRNA upstream 129784 238789 ~ 260075 (-) False LOC117596825
XM_034302585.1 mRNA upstream 112724 221729 ~ 267815 (-) True LOC117596825
XM_026910954.2 mRNA upstream 637333 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 729506 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 729506 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 816946 925951 ~ 937449 (-) True ppa2
TU45461 other upstream 151764 260769 ~ 261151 (-) False LOC117596825
TU45455 other upstream 154481 263486 ~ 267799 (-) False LOC117596825
TU45475 other upstream 205976 314981 ~ 315528 (-) True G38400
TU46718 other upstream 1161536 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 1176803 1285808 ~ 1289815 (-) False cntln

Expression Profile