RNA id: TU45307


Basic Information

Item Value
RNA id TU45307
length 247
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G38275
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 109853 ~ 110099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatttgtgataaatgcatgttagttagctctctgacggagaagattgcagcattagaggtgcgcatccagactctagagagggttagtgagagtgagagcagcgtagtttctgtaggggaaagtctggatgccttaggcggagttagtaatcccccaactccggcattagagccctcacagcggggcgaatgggtgacgactcggcggcataatcgcaaagccaaagctaacgctaaggctcgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45305 lncRNA downstream 848 108773 ~ 109005 (-) True G38273
TU45265 lncRNA downstream 52095 56882 ~ 57758 (-) False G38240
TU45309 lncRNA upstream 1719 111818 ~ 112051 (-) True G38277
TU45443 lncRNA upstream 106155 216254 ~ 272915 (-) True G38385
XR_004577800.1 lncRNA upstream 124870 234969 ~ 236237 (-) True LOC117596827
TU45464 lncRNA upstream 128690 238789 ~ 260075 (-) False LOC117596825
TU45466 lncRNA upstream 159187 269286 ~ 273434 (-) True G38393
XM_034302585.1 mRNA upstream 111630 221729 ~ 267815 (-) True LOC117596825
XM_026910954.2 mRNA upstream 636239 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 728412 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 728412 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 815852 925951 ~ 937449 (-) True ppa2
TU45461 other upstream 150670 260769 ~ 261151 (-) False LOC117596825
TU45455 other upstream 153387 263486 ~ 267799 (-) False LOC117596825
TU45475 other upstream 204882 314981 ~ 315528 (-) True G38400
TU46718 other upstream 1160442 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 1175709 1285808 ~ 1289815 (-) False cntln

Expression Profile