RNA id: TU45310


Basic Information

Item Value
RNA id TU45310
length 244
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G38278
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 112426 ~ 112669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAAGGGGAAGTCATGTGAGTGAATAGGGGAGTTCATTGTTGGAAAGAGATTATAGATgctattgattttattttggaacAAGTGCAATAATGACTCACAAAGGTCTACTGAGTTACTCATGACAGGTGCAGGAGGGTTGGTGAGTTTATTGACTacagaaaacagtgttttaggATGGGAGGATGCATTGGTAATGAGGGCAGAATAGTAACTGGAGCGTGTAGTATTTAAAGCAGATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45306 lncRNA upstream 2253 109958 ~ 110173 (+) True G38274
TU45311 lncRNA downstream 96 112765 ~ 113124 (+) True G38279
TU45325 lncRNA downstream 11711 124380 ~ 124637 (+) True G38293
XR_004577591.1 lncRNA downstream 24659 137328 ~ 137848 (+) True LOC117596477
XR_004577903.1 lncRNA downstream 27580 140249 ~ 142236 (+) True LOC117596908
TU45368 lncRNA downstream 156651 269320 ~ 275049 (+) True G38317
XM_026911080.2 mRNA upstream 47880 46540 ~ 64546 (+) False pdcd4a
XM_034303144.1 mRNA downstream 17972 130641 ~ 137230 (+) True LOC117596909
XM_034303145.1 mRNA downstream 29683 142352 ~ 153475 (+) True LOC117596910
XM_034303146.1 mRNA downstream 41147 153816 ~ 165514 (+) True LOC117596911
XM_034302586.1 mRNA downstream 87932 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA downstream 87932 200601 ~ 213729 (+) False LOC113524725
TU45347 other downstream 89110 201779 ~ 205670 (+) False LOC113524725
TU45362 other downstream 94790 207459 ~ 208898 (+) False LOC113524725
XR_004577897.1 other downstream 576445 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 609458 722127 ~ 744984 (+) False mtap
TU45707 other downstream 951303 1063972 ~ 1065331 (+) True G38577

Expression Profile