RNA id: TU45362


Basic Information

Item Value
RNA id TU45362
length 261
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC113524725
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 200601 ~ 213729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577903.1 lncRNA upstream 65223 140249 ~ 142236 (+) True LOC117596908
XR_004577591.1 lncRNA upstream 69611 137328 ~ 137848 (+) True LOC117596477
TU45325 lncRNA upstream 82822 124380 ~ 124637 (+) True G38293
TU45311 lncRNA upstream 94335 112765 ~ 113124 (+) True G38279
TU45310 lncRNA upstream 94790 112426 ~ 112669 (+) True G38278
TU45368 lncRNA downstream 60422 269320 ~ 275049 (+) True G38317
TU45374 lncRNA downstream 106431 315329 ~ 315671 (+) True G38322
TU45375 lncRNA downstream 110918 319816 ~ 320020 (+) True G38323
TU45376 lncRNA downstream 129918 338816 ~ 339897 (+) True G38324
XR_004577801.1 lncRNA downstream 414457 623355 ~ 624398 (+) True LOC117596828
XM_034303146.1 mRNA upstream 41945 153816 ~ 165514 (+) True LOC117596911
XM_034303145.1 mRNA upstream 53984 142352 ~ 153475 (+) True LOC117596910
XM_034303144.1 mRNA upstream 70229 130641 ~ 137230 (+) True LOC117596909
XM_026911081.2 mRNA upstream 142913 46990 ~ 64546 (+) False pdcd4a
XM_026911078.2 mRNA upstream 143131 46985 ~ 64328 (+) False pdcd4a
XM_034303148.1 mRNA downstream 142512 351410 ~ 356704 (+) True LOC117596913
XM_034302591.1 mRNA downstream 147190 356088 ~ 360872 (+) True LOC117596826
XM_034302589.1 mRNA downstream 152058 360956 ~ 370724 (+) True LOC113525489
XM_034302590.1 mRNA downstream 155305 364203 ~ 370724 (+) False LOC113525489
XM_034303149.1 mRNA downstream 209616 418514 ~ 426890 (+) True LOC117596915
TU45347 other upstream 1789 201779 ~ 205670 (+) False LOC113524725
XR_004577897.1 other downstream 480216 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 513229 722127 ~ 744984 (+) False mtap
TU45707 other downstream 855074 1063972 ~ 1065331 (+) True G38577
TU45723 other downstream 893922 1102820 ~ 1129382 (+) False coro2a
TU45743 other downstream 957142 1166040 ~ 1168639 (+) False trmo

Expression Profile