RNA id: TU45376


Basic Information

Item Value
RNA id TU45376
length 1082
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G38324
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 338816 ~ 339897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaaacacctgaatttacatctactcCAGCTCAAACCACTACAAatggagaatcaacaactacagtagagacaaccacagctacaactgtaccaccaactacaacacaaacacctgaattgataactagtaccgtacacacaacatatccaacaacaacctcaggaccaacaacaacagaaacccCAGAATATACATCTAttctagctccaaccactacaaataaagactcaacaactacagtagagacaaccacagctacaactgtaccaccaactacaacacaaacacctgaattgataactagtacaatacacacaacatatccaacaacaacttcaggaccaacaaccacagaaacatctgaatttacatctactctagctccaaccacaACAACtggagaatcaacaactacaatagagtcaaccacagctacgactgcaccatcaactacatcaccaaaaccagaattgagtagtagcattgcatccacaacacagccaacaacaacctcaggaccaacaaccacagacacacctgaatttacatctactctagctccaaccactacaaaaaAAGACTCAACcactacagtagagacaaccacagctaaaactgtaccaccaactacaacacaaacacctgaattgataactagtaccgtacacacaacatatccaacaacaacatcaggaccaacaaccacagaaacatctgaatttacatctactctagctccaaccactacaaatggagaattaacaactacaatagagtcaaccacagctacgactgcaccatcaactacatcaccaaaaccagaattgagtactagcattgcacccacaacacagccaacaacaacctcaggaccaacaaccacagaaacacctgaaattacatctactctagctccaaccactacaaatggagaatcaacaactacaatagagtcaaccacagctacgactgcaccatcaactacatcaccaaaaccagaaatgagtactagcattgcatccacaacacagccaacaacaacctcaggaccaacaaccacagaaacatctgaatttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45375 lncRNA upstream 18796 319816 ~ 320020 (+) True G38323
TU45374 lncRNA upstream 23145 315329 ~ 315671 (+) True G38322
TU45368 lncRNA upstream 63767 269320 ~ 275049 (+) True G38317
XR_004577903.1 lncRNA upstream 196580 140249 ~ 142236 (+) True LOC117596908
XR_004577591.1 lncRNA upstream 200968 137328 ~ 137848 (+) True LOC117596477
XR_004577801.1 lncRNA downstream 283458 623355 ~ 624398 (+) True LOC117596828
TU45414 lncRNA downstream 348773 688670 ~ 699198 (+) True G38361
TU45418 lncRNA downstream 348773 688670 ~ 699198 (+) False G38361
XR_004577806.1 lncRNA downstream 350988 690885 ~ 693150 (+) True LOC117596830
TU45580 lncRNA downstream 370438 710335 ~ 710574 (+) True G38481
XM_034302586.1 mRNA upstream 125087 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA upstream 125087 200601 ~ 213729 (+) False LOC113524725
XM_034303146.1 mRNA upstream 173302 153816 ~ 165514 (+) True LOC117596911
XM_034303145.1 mRNA upstream 185341 142352 ~ 153475 (+) True LOC117596910
XM_034303144.1 mRNA upstream 201586 130641 ~ 137230 (+) True LOC117596909
XM_034303148.1 mRNA downstream 11513 351410 ~ 356704 (+) True LOC117596913
XM_034302591.1 mRNA downstream 16191 356088 ~ 360872 (+) True LOC117596826
XM_034302589.1 mRNA downstream 21059 360956 ~ 370724 (+) True LOC113525489
XM_034302590.1 mRNA downstream 24306 364203 ~ 370724 (+) False LOC113525489
XM_034303149.1 mRNA downstream 78617 418514 ~ 426890 (+) True LOC117596915
TU45362 other upstream 129918 207459 ~ 208898 (+) False LOC113524725
TU45347 other upstream 133146 201779 ~ 205670 (+) False LOC113524725
XR_004577897.1 other downstream 349217 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 382230 722127 ~ 744984 (+) False mtap
TU45707 other downstream 724075 1063972 ~ 1065331 (+) True G38577
TU45723 other downstream 762923 1102820 ~ 1129382 (+) False coro2a
TU45743 other downstream 826143 1166040 ~ 1168639 (+) False trmo

Expression Profile