RNA id: TU45443


Basic Information

Item Value
RNA id TU45443
length 296
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G38385
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 216254 ~ 272915 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aacacaggctacaacaaacacagaaacaacaacagtagaaacagctgcatctacaactactccagctccaagcactacaactgtggaaccaacaactacagaggaaacaaccacagctacaactgtaccaactacaacaccaacaacagacctgaccagtactgctgtatccacaacacaggctacaacacaggctacaacaaacacagaaacaacaacagtagaaacagctgcatctacaactactccagctccaagcactacaactgtggaaccaacaactacagtaccaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45309 lncRNA downstream 104203 111818 ~ 112051 (-) True G38277
TU45307 lncRNA downstream 106155 109853 ~ 110099 (-) True G38275
TU45305 lncRNA downstream 107249 108773 ~ 109005 (-) True G38273
TU45265 lncRNA downstream 158496 56882 ~ 57758 (-) False G38240
TU45476 lncRNA upstream 46912 319827 ~ 320131 (-) True G38401
TU45477 lncRNA upstream 53767 326682 ~ 326986 (-) True G38402
TU45479 lncRNA upstream 69916 342831 ~ 343055 (-) True G38404
TU45480 lncRNA upstream 70446 343361 ~ 343651 (-) True G38405
TU45499 lncRNA upstream 157972 430887 ~ 441977 (-) True G38418
XM_026910954.2 mRNA upstream 473423 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 565596 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 565596 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 653036 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 731562 1004477 ~ 1007050 (-) True LOC113524614
TU45475 other upstream 42066 314981 ~ 315528 (-) True G38400
TU46718 other upstream 997626 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 1012893 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 1020129 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 1599018 1871933 ~ 1877225 (-) False G39603

Expression Profile