RNA id: TU45461


Basic Information

Item Value
RNA id TU45461
length 277
RNA type TUCP
GC content 0.58
exon number 2
gene id LOC117596825
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 221729 ~ 267815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45464 lncRNA downstream 694 238789 ~ 260075 (-) False LOC117596825
XR_004577800.1 lncRNA downstream 24532 234969 ~ 236237 (-) True LOC117596827
TU45309 lncRNA downstream 148718 111818 ~ 112051 (-) True G38277
TU45307 lncRNA downstream 150670 109853 ~ 110099 (-) True G38275
TU45305 lncRNA downstream 151764 108773 ~ 109005 (-) True G38273
TU45466 lncRNA upstream 8135 269286 ~ 273434 (-) True G38393
TU45476 lncRNA upstream 58676 319827 ~ 320131 (-) True G38401
TU45477 lncRNA upstream 65531 326682 ~ 326986 (-) True G38402
TU45479 lncRNA upstream 81680 342831 ~ 343055 (-) True G38404
TU45480 lncRNA upstream 82210 343361 ~ 343651 (-) True G38405
XM_026910954.2 mRNA upstream 485187 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 577360 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 577360 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 664800 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 743326 1004477 ~ 1007050 (-) True LOC113524614
TU45455 other upstream 2335 263486 ~ 267799 (-) False LOC117596825
TU45475 other upstream 53830 314981 ~ 315528 (-) True G38400
TU46718 other upstream 1009390 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 1024657 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 1031893 1293044 ~ 1301503 (-) False cntln

Expression Profile