Fish Transcriptome and Expression Database

RNA id: XM_034302585.1

Basic Information

Item	Value
RNA id	XM_034302585.1
length	8769
RNA type	mRNA
GC content	0.45
exon number	62
gene id	LOC117596825
representative	True

Chromosome Information

Item	Value
chromosome id	NC_047597.1
NCBI id	CM018543.1
chromosome length	33776708
location	221729 ~ 267815 (-)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome
species	striped catfish (Pangasianodon hypophthalmus)

Sequence

aacaaaagcactagaaacagctgcatctacaactactccagctccaaccattacaactgtggaaccaacaactacagagcaaagaaccacagctacaactgtaccaactACACCATTTACAACAGAACTGACCAGTACTGCTGTTTCAGCTACACAGGTTACGACAAGCACAGGACCAACAACAGTAGAAACATCTGCATCTAcaactactccagctccaagcattacaactgtggaaccaacaactacagaggaaagcaccacagctacaactgtaccaactACACCACCAACAACAGAACTGACCAGTACTGCTGTTTCAACTACACAGGTTACGACAAGCACAGGACCAACAACAGTAGAAACAGATGCATCTACAAGTATTCCACCTCTAACCAATGCAATTGCTAACCCAACAACTGCAGTGGAAaaaaccacagctacaactgtaccaacATCAACAACAGAAATGAACAATATTACTCGATTCATAACACAGGCTACAGTAACTACAaaaccaacaacagcagaaacaaataGACTTACAACTACTCCATTTCCAAGCAGTACAAATGAAGCATCAACAGCAATCACAGAACCAACAACAGAAGAAACATCTACTAGTACAACTAGTACAAACTTGAGTGCTACATTTGAAGCACCAAGATCTACAGAGGAAAGTCCAATGACATCACCTGAAACTGCACaaccaacaattacaacttcTGAAATGACAACTACTACTGAGTTCACAACACAGTCTCCAACTTCTCCAGCAACAAAAGCATTAATACCTGTTTCAGCTGTGGTTCACACAAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTAACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGGAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACTCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGATTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACCAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaacGACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAACACTctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGACTTCAGGAAACCAGGTTAAAGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCATTCAACGTCAGTAACATCAGCatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTACGagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTGCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCAGTCAACTTTGCAttcaacatcagtaacatcagcatGCCAGAGAACCCTGAACTCAGGAATGACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCAGTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATTGGGGAACGTCCTGATACACATTCGTCTAGTTTTTAAGAACTTGACCAGAGTACCCACTGAGGCTGAGGTTCTCAAAGCTGCTAATGCTCTGCTGGAACCAAATGCCAGAACAGTGCGAGATCTTACAACACAAAAACTGAACGAACCTGTGAGCATACAGAACGTCACCTATCAGAAAATTGACAGCAACTCATACTTTATCAGCTTTGCATTCCAAATCCGTGATGTGAACATCTCCAAGGACATCCAGCTGATGAACATAACATATGATATAATCCAAAACAGCATCAACAGCCTGCTGAACACTATTCTGAATGCAAAAGGTGCTCATTCGTTTGACTTCCCACGAGCAAACTACCTgATTAATGGTACAGTCATTGTGGCTGATTCAGAATTCATCTTTGTGGAAGGTGAAACCAAGTGGACACCAAGTGGATTTCTTGCTGCAATACTCAACATTAGCGGTCTGTTGAACTTCACCACTCCTGCTGCTCAAACAACCCCCCCTGTCCATGTAGTCCTGAGGCCCACAGTCCAAGCACACAACAGCACCTCTGGGGGAAATGCTGCATGGATCCTGGCCATCATTATCCCCTGCAGTATAGTCATTATTCTCATACCGTGCTGGATTCTGCTCTGCTGTCTGCTGTGTGGCTGCTGTGCTGGTTTAAGGAGGCGCTACAACAGAAGACGGTCCTACAATGTCCAACGCACAACATGAAACAGACGCTTTTAAAAATAGACGTGTAAAATAAGCTCATAAAAATATGACTTGTAACTCCAAACCCAAATGTacctaatatttaaattatttattaaggatATTTATAATAAGCCTTATCAAATGATGTCTCTAAATAGTTCttattttattctgatttgtTATTCAATAATACATCAAGTTGTGGCAaaataatttgtcatttaaattaaacttaGTAATACTGAAGATATTTTTCatgatccattttaaattatgttaattTCAAATTGGGATTAATTATAATAGTATTGGCCCTTATCCAGAGTTGCATAGAAACAAGCATGGATTCAATCGCCTGGAATGACCTATGAATAAACCTGCTTCTGATTCATGAAACTGTCATACAACATCAAAACAAGTGTTGATTTGAGAGCATATGTTAAAACAAccataagaagaagaagctccATCCACTATTTACATGTTTGTacactatttattatttcatatgcATAAGGCACACCCTAATTTAAATCAACTTCAGAGAAGCTAGAAGAGTTAGAGGTGCTTGTGCCTGAGGTTGGTGAATGTAGAAATATTCTTTTCAGAAGCCtcaaaaaataatgtgaataaaaataaagtggtaGCATCCCCCACCACTTAGTAGGACATTTTCTAATAAGACAGCAGTGACTGAGAGCCTCAATTCTGCCTTCAGAACTCAGGGAACCATTTGGCACATACACTCAACTACATACTTATTAGCATCCTTCAAAGGACCTGCTAAAATGACAGGAAACATTACAAACAATTATTTGGATGTTACTATGGTGGTTGAGGATCCTTGTGCTGGAAGACTTTATCAACAAAATCCAGTCAGTCAGggcaaaagcacacacacacacacacacacacaaaatggtaGAGCAGCAAGGGTTATACACAGGTTCCCAgctctggtcctggagaacccatTGTCCTGGACcttttagtgttttcctgctctaatACTA

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
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A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU45309	lncRNA	downstream	109678	111818 ~ 112051 (-)	True	G38277
TU45307	lncRNA	downstream	111630	109853 ~ 110099 (-)	True	G38275
TU45305	lncRNA	downstream	112724	108773 ~ 109005 (-)	True	G38273
TU45265	lncRNA	downstream	163971	56882 ~ 57758 (-)	False	G38240
TU45466	lncRNA	upstream	1471	269286 ~ 273434 (-)	True	G38393
TU45476	lncRNA	upstream	52012	319827 ~ 320131 (-)	True	G38401
TU45477	lncRNA	upstream	58867	326682 ~ 326986 (-)	True	G38402
TU45479	lncRNA	upstream	75016	342831 ~ 343055 (-)	True	G38404
TU45480	lncRNA	upstream	75546	343361 ~ 343651 (-)	True	G38405
XM_026910954.2	mRNA	upstream	478523	746338 ~ 755807 (-)	True	cdkn2a/b
XM_034302560.1	mRNA	upstream	570696	838511 ~ 871353 (-)	False	cxxc4
XM_034302561.1	mRNA	upstream	570696	838511 ~ 868038 (-)	True	cxxc4
XM_026910937.2	mRNA	upstream	658136	925951 ~ 937449 (-)	True	ppa2
XM_026910944.2	mRNA	upstream	736662	1004477 ~ 1007050 (-)	True	LOC113524614
TU45475	other	upstream	47166	314981 ~ 315528 (-)	True	G38400
TU46718	other	upstream	1002726	1270541 ~ 1280335 (-)	False	cntln
TU46693	other	upstream	1017993	1285808 ~ 1289815 (-)	False	cntln
TU46700	other	upstream	1025229	1293044 ~ 1301503 (-)	False	cntln
TU46918	other	upstream	1604118	1871933 ~ 1877225 (-)	False	G39603

gene	XLOC_000007 f7
RNA	TCONS_00000019
bioproject	PRJEB12982

economic fish

Basic

Function

Jbrowse2

Neighbor

Expression

RNA id: XM_034302585.1

Basic Information

Chromosome Information

Sequence

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

Expression Profile

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