RNA id: TU45475


Basic Information

Item Value
RNA id TU45475
length 548
RNA type TUCP
GC content 0.40
exon number 1
gene id G38400
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 314981 ~ 315528 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgatgttgttgttggatatgttgtgtgtatggtactagttatcaattcaggtgtttgtgttgtagttggtggtacagttgtagctgtggttgtctctactgtagttgttgatttTCCATTTGTtgtggttggagctagagtagatgtagattcaggcatttctgtggttgttggtcctgaggtcgttgttggatatgttgtggatgcaatgccagtactcaattctggtttttgtgatgtagttgatggtgcagtcatagctgtggttgactctattgtagttgttaattctccatttgtagtggttggagctagagtagatgtagattcaggtgtttctgtggttgttggtcctgatgttgttgttggatatgttATGTGTACGGTACTAGTTatcaattcaggtgtttgtgttgtagttggtggtacagttgtagctgtggttgtctctactgtagttgttgagtctttatttgtagtggttgtagctagagtagatgtagattcaggtgtttctgtggttgttggtcctgatgttgttattgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45466 lncRNA downstream 41547 269286 ~ 273434 (-) True G38393
TU45443 lncRNA downstream 42066 216254 ~ 272915 (-) True G38385
TU45464 lncRNA downstream 54906 238789 ~ 260075 (-) False LOC117596825
XR_004577800.1 lncRNA downstream 78744 234969 ~ 236237 (-) True LOC117596827
TU45309 lncRNA downstream 202930 111818 ~ 112051 (-) True G38277
TU45476 lncRNA upstream 4299 319827 ~ 320131 (-) True G38401
TU45477 lncRNA upstream 11154 326682 ~ 326986 (-) True G38402
TU45479 lncRNA upstream 27303 342831 ~ 343055 (-) True G38404
TU45480 lncRNA upstream 27833 343361 ~ 343651 (-) True G38405
TU45499 lncRNA upstream 115359 430887 ~ 441977 (-) True G38418
XM_034302585.1 mRNA downstream 47166 221729 ~ 267815 (-) True LOC117596825
XM_026910954.2 mRNA upstream 430810 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 522983 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 522983 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 610423 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 688949 1004477 ~ 1007050 (-) True LOC113524614
TU45455 other downstream 47182 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 53830 260769 ~ 261151 (-) False LOC117596825
TU46718 other upstream 955013 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 970280 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 977516 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 1556405 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 1556405 1871933 ~ 1877225 (-) False G39603

Expression Profile