RNA id: TU45479


Basic Information

Item Value
RNA id TU45479
length 225
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G38404
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 342831 ~ 343055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtctctactgtagttgttgagtctttatttgtagtggttggagctagagtagatgtagatttaggagtttctgttgttgttggtcctgatgttgttgttggctgtgttgtggatgcaatgctagtactcatttctggttttggtgatgtagttgatggtgcagtcgtagctgtggttgactctattgtagttgttgattcttCATTTGTAGTGGTTGAAGCCaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45477 lncRNA downstream 15845 326682 ~ 326986 (-) True G38402
TU45476 lncRNA downstream 22700 319827 ~ 320131 (-) True G38401
TU45466 lncRNA downstream 69397 269286 ~ 273434 (-) True G38393
TU45443 lncRNA downstream 69916 216254 ~ 272915 (-) True G38385
TU45480 lncRNA upstream 306 343361 ~ 343651 (-) True G38405
TU45499 lncRNA upstream 87832 430887 ~ 441977 (-) True G38418
TU45512 lncRNA upstream 101339 444394 ~ 449427 (-) True G38421
TU45522 lncRNA upstream 225697 568752 ~ 572675 (-) True G38430
TU45565 lncRNA upstream 348092 691147 ~ 697003 (-) True G38467
XM_034302585.1 mRNA downstream 75016 221729 ~ 267815 (-) True LOC117596825
XM_026910954.2 mRNA upstream 403283 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 495456 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 495456 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 582896 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 661422 1004477 ~ 1007050 (-) True LOC113524614
TU45475 other downstream 27303 314981 ~ 315528 (-) True G38400
TU45455 other downstream 75032 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 81680 260769 ~ 261151 (-) False LOC117596825
TU46718 other upstream 927486 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 942753 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 949989 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 1528878 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 1528878 1871933 ~ 1877225 (-) False G39603

Expression Profile