RNA id: TU45480


Basic Information

Item Value
RNA id TU45480
length 291
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G38405
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 343361 ~ 343651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggttgttggccctgaggttgttgttggctgtgttgtggatgcaatgctagtactcaattctggttttggtgatgtagttgatggtgcagtcgtagctgtggttgactctactgtagttgttgattcttcatttgtagtggttggagctagagtagatgtaaattcaggtgtttctgtggttgttggtcctgaggttgttgttggctgtgttgtggatgcaatgctagtactaATTTCTGGTTTTCGTGATGTAGTTGGTgatacagttgtagctgtggttgtctctactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45479 lncRNA downstream 306 342831 ~ 343055 (-) True G38404
TU45477 lncRNA downstream 16375 326682 ~ 326986 (-) True G38402
TU45476 lncRNA downstream 23230 319827 ~ 320131 (-) True G38401
TU45466 lncRNA downstream 69927 269286 ~ 273434 (-) True G38393
TU45464 lncRNA downstream 83286 238789 ~ 260075 (-) False LOC117596825
TU45499 lncRNA upstream 87236 430887 ~ 441977 (-) True G38418
TU45512 lncRNA upstream 100743 444394 ~ 449427 (-) True G38421
TU45522 lncRNA upstream 225101 568752 ~ 572675 (-) True G38430
TU45565 lncRNA upstream 347496 691147 ~ 697003 (-) True G38467
TU45575 lncRNA upstream 362328 705979 ~ 706336 (-) True G38476
XM_034302585.1 mRNA downstream 75546 221729 ~ 267815 (-) True LOC117596825
XM_026910954.2 mRNA upstream 402687 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 494860 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 494860 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 582300 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 660826 1004477 ~ 1007050 (-) True LOC113524614
TU45475 other downstream 27833 314981 ~ 315528 (-) True G38400
TU45455 other downstream 75562 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 82210 260769 ~ 261151 (-) False LOC117596825
TU46718 other upstream 926890 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 942157 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 949393 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 1528282 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 1528282 1871933 ~ 1877225 (-) False G39603

Expression Profile