RNA id: TU45522


Basic Information

Item Value
RNA id TU45522
length 275
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G38430
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 568752 ~ 572675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttgtgttgtgtatacagtggtagtgttgaGTTCaattgctggtgttgcagttgttggcacagttgtagctgtgatcctTTCCACTGtctttgttgtttcctgaattgtagttgttggagctgtggtcagtgtagatgcaggtgtgtctgctgttgttggagCTTTGGtcgttgtaccttgtgttgtgtatacagtggtagtggtCAGTTCagttcttggtgttgcagttgatggtgcagttgtAGCTGTCCCCCTTTCCACTGTCAGtgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45512 lncRNA downstream 119325 444394 ~ 449427 (-) True G38421
TU45499 lncRNA downstream 126775 430887 ~ 441977 (-) True G38418
TU45480 lncRNA downstream 225101 343361 ~ 343651 (-) True G38405
TU45479 lncRNA downstream 225697 342831 ~ 343055 (-) True G38404
TU45477 lncRNA downstream 241766 326682 ~ 326986 (-) True G38402
TU45565 lncRNA upstream 118472 691147 ~ 697003 (-) True G38467
TU45575 lncRNA upstream 133304 705979 ~ 706336 (-) True G38476
TU45579 lncRNA upstream 135376 708051 ~ 709105 (-) True G38480
TU45596 lncRNA upstream 149477 722152 ~ 744998 (-) True G38494
TU45598 lncRNA upstream 150799 723474 ~ 728816 (-) True G38496
XM_034302585.1 mRNA downstream 300937 221729 ~ 267815 (-) True LOC117596825
XM_026910954.2 mRNA upstream 173663 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 265836 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 265836 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 353276 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 431802 1004477 ~ 1007050 (-) True LOC113524614
TU45475 other downstream 253224 314981 ~ 315528 (-) True G38400
TU45455 other downstream 300953 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 307601 260769 ~ 261151 (-) False LOC117596825
TU46718 other upstream 697866 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 713133 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 720369 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 1299258 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 1299258 1871933 ~ 1877225 (-) False G39603

Expression Profile