RNA id: TU45666


Basic Information

Item Value
RNA id TU45666
length 225
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G38548
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 901934 ~ 907387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtagtgtgtggaatgatgtagtgtgtggaataatgtagtgtgtggaataatgtagtgtatggaataatgtagtgtgtggaatgatgtagtgtatggaataatgtagtgtgtggaataatgtagtgtatggaataatgtagtgtgtggaacaatgtagtgtatggaataatgtagtgtgtggaataatgtagtgtgtggaacactgtagtgtgtggaataatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45659 lncRNA upstream 30361 866186 ~ 871573 (+) True G38541
TU45647 lncRNA upstream 45890 854872 ~ 856044 (+) True G38531
TU45634 lncRNA upstream 69969 831733 ~ 831965 (+) True G38522
TU45625 lncRNA upstream 79110 822274 ~ 822824 (+) True G38514
TU45613 lncRNA upstream 125685 776036 ~ 776249 (+) True G38503
TU45670 lncRNA downstream 15266 922653 ~ 925538 (+) True G38552
TU45681 lncRNA downstream 52033 959420 ~ 959678 (+) True G38563
TU45682 lncRNA downstream 62756 970143 ~ 970350 (+) True G38564
TU45684 lncRNA downstream 67963 975350 ~ 975695 (+) True G38566
TU45688 lncRNA downstream 84854 992241 ~ 992600 (+) True G38570
XM_034303157.1 mRNA upstream 156935 740095 ~ 744999 (+) True mtap
XM_034303156.1 mRNA upstream 199367 698177 ~ 702567 (+) True LOC113525488
XM_034303153.1 mRNA upstream 213148 669887 ~ 688786 (+) True LOC113525487
XM_034302588.1 mRNA upstream 269404 625093 ~ 632530 (+) True LOC113525482
XM_034303150.1 mRNA upstream 437875 450594 ~ 464059 (+) True LOC113525486
XM_034303165.1 mRNA downstream 78161 985548 ~ 988804 (+) True LOC117596917
XM_026910956.2 mRNA downstream 110007 1017394 ~ 1025345 (+) True LOC113524625
XM_026910957.2 mRNA downstream 110007 1017394 ~ 1025345 (+) False LOC113524625
XM_026910958.2 mRNA downstream 111548 1018935 ~ 1025345 (+) False LOC113524625
XM_034303152.1 mRNA downstream 131288 1038675 ~ 1061874 (+) True arhgef38
TU45582 other upstream 156950 722127 ~ 744984 (+) False mtap
XR_004577897.1 other upstream 212431 689114 ~ 689503 (+) True LOC117596906
TU45362 other upstream 693036 207459 ~ 208898 (+) False LOC113524725
TU45347 other upstream 696264 201779 ~ 205670 (+) False LOC113524725
TU45707 other downstream 156585 1063972 ~ 1065331 (+) True G38577
TU45723 other downstream 195433 1102820 ~ 1129382 (+) False coro2a
TU45743 other downstream 258653 1166040 ~ 1168639 (+) False trmo
TU45964 other downstream 1076270 1983657 ~ 1997252 (+) False cdk2ap2
TU45993 other downstream 1178078 2085465 ~ 2091306 (+) False stox2a

Expression Profile