Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU45745 |
| length | 1048 |
| lncRNA type | sense_over |
| GC content | 0.53 |
| exon number | 4 |
| gene id | trmo |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1165845 ~ 1188594 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU45740 | lncRNA | upstream | 9376 | 1158426 ~ 1159328 (+) | True | G38596 |
| TU45725 | lncRNA | upstream | 15378 | 1146123 ~ 1153326 (+) | True | G38589 |
| TU45729 | lncRNA | upstream | 19000 | 1132078 ~ 1149704 (+) | False | G38589 |
| TU45734 | lncRNA | upstream | 26806 | 1128171 ~ 1141898 (+) | False | coro2a |
| TU45775 | lncRNA | downstream | 51036 | 1222443 ~ 1224581 (+) | False | sh3gl2a |
| TU45776 | lncRNA | downstream | 51166 | 1222573 ~ 1224581 (+) | False | sh3gl2a |
| TU45770 | lncRNA | downstream | 79393 | 1250800 ~ 1293634 (+) | True | G38608 |
| TU45796 | lncRNA | downstream | 98790 | 1270197 ~ 1271301 (+) | True | G38623 |
| TU45772 | lncRNA | downstream | 101561 | 1272968 ~ 1634967 (+) | False | G38608 |
| XM_026910950.2 | mRNA | upstream | 3335 | 1162619 ~ 1165369 (+) | True | hemgn |
| XM_026910952.2 | mRNA | upstream | 3335 | 1162627 ~ 1165369 (+) | False | hemgn |
| XM_034303012.1 | mRNA | upstream | 26770 | 1102778 ~ 1141934 (+) | True | coro2a |
| XM_034302835.1 | mRNA | upstream | 73783 | 1072738 ~ 1094921 (+) | False | uso1 |
| XM_034301658.1 | mRNA | downstream | 478 | 1171885 ~ 1176844 (+) | True | LOC113524617 |
| XM_034302121.1 | mRNA | downstream | 8071 | 1179478 ~ 1191246 (+) | True | spag5 |
| XM_034303180.1 | mRNA | downstream | 22812 | 1194219 ~ 1224601 (+) | True | sh3gl2a |
| XM_034302578.1 | mRNA | downstream | 77666 | 1249073 ~ 1257956 (+) | True | foxe1 |
| XM_034302883.1 | mRNA | downstream | 222790 | 1394197 ~ 1583922 (+) | True | bnc2 |
| TU45743 | other | upstream | 65 | 1166040 ~ 1168639 (+) | False | trmo |
| TU45723 | other | upstream | 39322 | 1102820 ~ 1129382 (+) | False | coro2a |
| TU45707 | other | upstream | 103373 | 1063972 ~ 1065331 (+) | True | G38577 |
| TU45582 | other | upstream | 423720 | 722127 ~ 744984 (+) | False | mtap |
| XR_004577897.1 | other | upstream | 479201 | 689114 ~ 689503 (+) | True | LOC117596906 |
| TU45964 | other | downstream | 812250 | 1983657 ~ 1997252 (+) | False | cdk2ap2 |
| TU45993 | other | downstream | 914058 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU45994 | other | downstream | 914058 | 2085465 ~ 2090841 (+) | False | stox2a |
| TU45995 | other | downstream | 914058 | 2085465 ~ 2091221 (+) | False | stox2a |
| XR_004577910.1 | other | downstream | 994216 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
