RNA id: XM_026910949.2


Basic Information

Item Value
RNA id XM_026910949.2
length 1897
RNA type mRNA
GC content 0.51
exon number 7
gene id trmo
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1165845 ~ 1188594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGATTAGAACTATCCAATCAGCGGGCGATGTTTGAATATGAACTAGCCAAGCATAGCGCAGAAGGCGGGAAAATATTAGCCAATCCTAGTCCAGGAGGCGGGATACAACAAACCAATCCTGACATATGAGGCGGGATCCTTACTATCCAATCCTAGAGCAGGAGGGCGGGGCTTTATCAGAATGCGGAAGTGAACAAATAACACGAGTGCTGACGGAAACCTGATGAATTCAGACATACAGTGTTAATTTGAGATTAATTTTGGGTTTACGTGATTAAAACGTTTCTATAGTTGAAATCTGTgtctttatttgaaaaaaaaaggattaaatttCGTGTAAGATGTCAGCAGGGACGTGCAGCTGTTCAGAACATGTGCAGTGGCTAAAACAGCAAGTTTCAGTCATGAGAAAAGAGATGAAGAACCTCAGgCAGTATGTGGAGAGTTCAGTTCGAGCCCACAGGAAACACATGGCGTCTCTGCACTCCATGCTGAAGGATGTTCTCGATAAAAAGCAGTTGATGACGAAgaatccatcatcatcatcatcatcctcattgtcatcctcctcctcctctcagaGTGCAGCGGGGACGGAGCTGTCGTTAGAGAAAGGTCATATCCGCAGCGTCCCCATCGGcttcatcacttcctgttttgctcGGAAGAACGGCACGCCGAGACAGCCGACCGTCTGCAGCTCGTCTCGCGCTCGTCTCAAAATCCAGTCCTCTGTGTTCAACAACCCTGAACACGCTCTCACCGGCCTGCAGCACTACTCCCacgtctggcTCATCTTTCTCTTCCATAAGAACGGACACATGAGCTATAAAGCTAAAGTGAAGCCTCCTCGTCTGAACGGAGAGAAAGTGGGAGTTTATTCCACCGCGCCATCAGCCCTCACACCGCGCTAAACTGGACTCTATCACAACAGCGGGCCATCAGGGACAGGACTCACACTCGCTAAACTGGACTCTATCAcagGTGATGTTCTGCACCTGTCAGGTGTGGATCTGATCTCCGGCACTCCTGTGCTCGATATTAAACCCTATATTCCTGAGTACGACTCTCCCGTCACACACACCACGCTGACTGCAGAGCCGCAGCACCAACAGGAAGTGCCCTCTGACACACCTGACGCCCTGGAGGAAGTAGAACCTGCAGAAGCAGAGGTTTGGAGAACTCGCGCCTCCTCCTCTCGGCTGGAAGCTGGTGAGAAGCTCGGTGAAGCTGCCGAGGTTTCAGCAGGACGTGATGTTAGCGGTGTGCTGGAGGAGGTGAGGGAGGTTCTCCTGCAGGGGGCGCTGTGTTCTCAGAGCAGGGCTGAagataaacacactgacacaccagCAGCAgcggaagaggaggaggaggaggaagaggaggcgTGTGAGTCGAACAGCAGCGTCGCTTCCTGGATCAGAAAACCTCCAGTACACACTCTGAGTGTGAGATTCACTCCTACTGCAGAGAGACAACTCGCCGACTTCCTGCCTCCTCACTGCTCAGACACAGGAAGGCCGAAGTTCCAGTTTTTAAATGGTCCAGAGGAAGCAGCCGCCGCCATCCGGGGAGTTTTATCAGCTGATCCGAGATCAGTGTACCGGAGGAACCGCTGCAGCGATCGCCTTTTCTTCTTCAGTCTGGACACGGCTCACATCACCTGCTGGTTCGGGGACGGATTCGCTGAAGTGCTGCGCGTTCGGCCCGTGACGAGTCCAGACACACAAGCTCAGGGTCCGAGTGAGCCTTCACTGGTCACCCCCTCTCAAATATAAACTCAGATCTtaaaatttaatcataaatataacatcctgtaagtgtgtgtgatgtgtgtgtgtgtgtgatgtgtgtgtgtgtgtgatgtgtgtgtgatgtgtgtgtgtgatgtgtgt

Function

GO: NA

KEGG:

id description
K22900 TRMO, trmO; tRNA (adenine37-N6)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45740 lncRNA upstream 6517 1158426 ~ 1159328 (+) True G38596
TU45725 lncRNA upstream 12519 1146123 ~ 1153326 (+) True G38589
TU45729 lncRNA upstream 16141 1132078 ~ 1149704 (+) False G38589
TU45734 lncRNA upstream 23947 1128171 ~ 1141898 (+) False coro2a
TU45775 lncRNA downstream 51161 1222443 ~ 1224581 (+) False sh3gl2a
TU45776 lncRNA downstream 51291 1222573 ~ 1224581 (+) False sh3gl2a
TU45770 lncRNA downstream 79518 1250800 ~ 1293634 (+) True G38608
TU45796 lncRNA downstream 98915 1270197 ~ 1271301 (+) True G38623
TU45772 lncRNA downstream 101686 1272968 ~ 1634967 (+) False G38608
XM_026910950.2 mRNA upstream 476 1162619 ~ 1165369 (+) True hemgn
XM_026910952.2 mRNA upstream 476 1162627 ~ 1165369 (+) False hemgn
XM_034303012.1 mRNA upstream 23911 1102778 ~ 1141934 (+) True coro2a
XM_034302833.1 mRNA upstream 70924 1072737 ~ 1094921 (+) False uso1
XM_034301658.1 mRNA downstream 603 1171885 ~ 1176844 (+) True LOC113524617
XM_034302121.1 mRNA downstream 8196 1179478 ~ 1191246 (+) True spag5
XM_034303180.1 mRNA downstream 22937 1194219 ~ 1224601 (+) True sh3gl2a
XM_034302578.1 mRNA downstream 77791 1249073 ~ 1257956 (+) True foxe1
XM_034302883.1 mRNA downstream 222915 1394197 ~ 1583922 (+) True bnc2
TU45723 other upstream 36463 1102820 ~ 1129382 (+) False coro2a
TU45707 other upstream 100514 1063972 ~ 1065331 (+) True G38577
TU45582 other upstream 420861 722127 ~ 744984 (+) False mtap
XR_004577897.1 other upstream 476342 689114 ~ 689503 (+) True LOC117596906
TU45362 other upstream 956947 207459 ~ 208898 (+) False LOC113524725
TU45964 other downstream 812375 1983657 ~ 1997252 (+) False cdk2ap2
TU45993 other downstream 914183 2085465 ~ 2091306 (+) False stox2a
TU45994 other downstream 914183 2085465 ~ 2090841 (+) False stox2a
TU45995 other downstream 914183 2085465 ~ 2091221 (+) False stox2a
XR_004577910.1 other downstream 994341 2165623 ~ 2165784 (+) True LOC113546173

Expression Profile