RNA id: TU45776


Basic Information

Item Value
RNA id TU45776
length 1596
lncRNA type sense_over
GC content 0.34
exon number 2
gene id sh3gl2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1194219 ~ 1224601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctctctctctctctctctgtgtctctctctctgtctctctctctctctgtagctccTCTGGATCAGCCGTGTTGTCGCGCTCTGTATGATTTCGATCCGGAGAACGAGGGCGAGCTGCGCTTTAAGGAAGGTGACATCATCacgctgaccaatcagatcgaTGACAACTGGTATGAAGGGGTGATAAACGGCCAATCAGGATTCTTCCCTGTCAATTACGTTGATGTCCTGGTGGCTTTGCCGCATTAAATCCATCCTGAACCCTCGATTCCCATCATGCACTTCTcctggaaagagagaaaaatcatTGCAGTGATAATtagaacagaaaagaagaatattcatctttctgttttttccccatttctcttttctctctcgtgTAAGTTTCTGATATTTCTCTCCTTTATTTCCTGCTCTCCGTTTCGTCTTtgtgtatttctctctttcttcacttttccttctctctgtttctctcttttctccttctttctctctgtcgtGTTTGTGCATGATGTAAGAAGCGTTTGCACTTTGGAGGAAATGTATTATTTCcgattttattttgtgtgatgtaaaaaagtattgtttttttgttgataaAATGTCCGTCACTTCCGCGCAGAGAAACAGCTGACGAAGTGAAAACAGCTGAGGTTtcgtttttttccctttgagcTTTCTGAACTTttattaggaaaataaaattctaatttCATTATGGccaatgtattaatataatatatttgccagctgtattaaaaataattattttaatacatcTATAATTTAATACATAAACACTTAGTAAAATGTGAATCAATTAAAGtgatgaataattcatttttttctccttttgcaTGTTGAGTTTCACTTGAACACATTTCACactttgctttgctttatttaattataaagataaatttaatttaatttaaacaacaacaatgtgaAATTTAAAGCGTGACTCAGTGAAAAatggaatattaatattaataaacacacaacgTTAATGTTTCTGTGTGAAATCAAGCTGtgagatttttctttattaataatcAAACAGTAATTAATCTCCATAACCTGAgagaaaaacattacagaagaaataaaagaataattaaGCAGTGTGTAGTATTTAGATCAAAATATACTCtttaatctaaaataaaataaatcacatgtttaACAGTGTCATTCTGTCGTGTTGGATAATTTCATAATCCAAACATTACAGCGCTTACAAAAATAATCTCATCTAAGTGTCAAACctctcaatctggcaaccttatATTACATCAGGTCTAATGATCTGACACTGGATtagatatttaattatttatttgttgatattttatttacttgttttgttttttgaagcTGCACACATGGGtgtcaatctggcaacccacaCCTCAATCAAACCCAGAAACCGTCTGATTATCAGATCGCTATAAAAGTTAAAACGAGTATTAAATGTAACGGGAAGTTGTTATAAACGTCTGAAACTCCACCTGTATTATCCTGATTGTTCAAAAGTACAGATTTGTTCATGaaactgatattaaatataaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45746 lncRNA upstream 33979 1168704 ~ 1188594 (+) False trmo
TU45744 lncRNA upstream 51166 1168704 ~ 1171407 (+) False trmo
TU45745 lncRNA upstream 51166 1168704 ~ 1171407 (+) False trmo
TU45740 lncRNA upstream 63245 1158426 ~ 1159328 (+) True G38596
TU45725 lncRNA upstream 69247 1146123 ~ 1153326 (+) True G38589
TU45770 lncRNA downstream 26219 1250800 ~ 1293634 (+) True G38608
TU45796 lncRNA downstream 45616 1270197 ~ 1271301 (+) True G38623
TU45772 lncRNA downstream 48387 1272968 ~ 1634967 (+) False G38608
TU45767 lncRNA downstream 62991 1287572 ~ 1772777 (+) False G38608
TU45762 lncRNA downstream 69962 1294543 ~ 1390044 (+) False G38607
XM_034302121.1 mRNA upstream 31327 1179478 ~ 1191246 (+) True spag5
XM_034301658.1 mRNA upstream 45729 1171885 ~ 1176844 (+) True LOC113524617
XM_026910949.2 mRNA upstream 51291 1165845 ~ 1171282 (+) True trmo
XM_026910950.2 mRNA upstream 57204 1162619 ~ 1165369 (+) True hemgn
XM_034302578.1 mRNA downstream 24492 1249073 ~ 1257956 (+) True foxe1
XM_034302883.1 mRNA downstream 169616 1394197 ~ 1583922 (+) True bnc2
XM_034302884.1 mRNA downstream 169616 1394197 ~ 1583204 (+) False bnc2
XM_026911049.2 mRNA downstream 289631 1514212 ~ 1583922 (+) False bnc2
XM_034302861.1 mRNA downstream 559959 1784540 ~ 1806551 (+) True psip1a
TU45743 other upstream 53934 1166040 ~ 1168639 (+) False trmo
TU45723 other upstream 93191 1102820 ~ 1129382 (+) False coro2a
TU45707 other upstream 157242 1063972 ~ 1065331 (+) True G38577
TU45582 other upstream 477589 722127 ~ 744984 (+) False mtap
XR_004577897.1 other upstream 533070 689114 ~ 689503 (+) True LOC117596906
TU45964 other downstream 759076 1983657 ~ 1997252 (+) False cdk2ap2
TU45993 other downstream 860884 2085465 ~ 2091306 (+) False stox2a
TU45994 other downstream 860884 2085465 ~ 2090841 (+) False stox2a
TU45995 other downstream 860884 2085465 ~ 2091221 (+) False stox2a
XR_004577910.1 other downstream 941042 2165623 ~ 2165784 (+) True LOC113546173

Expression Profile