RNA id: TU45857


Basic Information

Item Value
RNA id TU45857
length 517
lncRNA type intronic
GC content 0.49
exon number 2
gene id G38681
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1478557 ~ 1479139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtctgtctctgtaggttcacctgtctgtgtctgtacattcacctgtctgtctctgtagtttcacctgtctgtctctgcaggttcacctgtctgtctctgcatgttcacctgtctgtgtctgtacattcacctgtctgtctctgtaggttcacctgtctgtgtctgtaggttcacctgtctgtgtctgtacattcacctgtctgtctctgtaggttcacctgtctgtctctgtaggttcacctgtctgtgtctgtaggttcacctgtctgtctctgtaggttcacctgtctgtctctgtaggttcacctgtctgtgtctgtacattcacctgtctgtctctgcatgttcacctgtctgtctctgtaggttcacctgtctgtctctgtagtttcacctgtctgtgtctgtaggttcacctgtctgtctctgtaggttcacctgtctgtctctgcatgttcacctgtctgtctctgcaggttcacctgtctgtctctgcatgttcacctgtctgtctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45850 lncRNA upstream 14120 1462462 ~ 1464437 (+) False G38676
TU45851 lncRNA upstream 15479 1462462 ~ 1463078 (+) True G38676
TU45762 lncRNA upstream 88513 1294543 ~ 1390044 (+) False G38607
TU45763 lncRNA upstream 88513 1294543 ~ 1390044 (+) False G38607
TU45811 lncRNA upstream 142686 1333984 ~ 1335871 (+) True G38637
TU45865 lncRNA downstream 19029 1498168 ~ 1521254 (+) True G38687
TU45890 lncRNA downstream 284732 1763871 ~ 1764353 (+) True G38709
TU45903 lncRNA downstream 327495 1806634 ~ 1814009 (+) True G38721
TU45970 lncRNA downstream 442699 1921838 ~ 1975630 (+) True G38758
TU45971 lncRNA downstream 446185 1925324 ~ 1928330 (+) True G38759
XM_034302578.1 mRNA upstream 220601 1249073 ~ 1257956 (+) True foxe1
XM_034303180.1 mRNA upstream 253956 1194219 ~ 1224601 (+) True sh3gl2a
XM_034302121.1 mRNA upstream 287311 1179478 ~ 1191246 (+) True spag5
XM_034301658.1 mRNA upstream 301713 1171885 ~ 1176844 (+) True LOC113524617
XM_026910949.2 mRNA upstream 307275 1165845 ~ 1171282 (+) True trmo
XM_026911049.2 mRNA downstream 35073 1514212 ~ 1583922 (+) False bnc2
XM_034302861.1 mRNA downstream 305401 1784540 ~ 1806551 (+) True psip1a
XM_034302857.1 mRNA downstream 305529 1784668 ~ 1806551 (+) False psip1a
XM_034302860.1 mRNA downstream 305542 1784681 ~ 1806551 (+) False psip1a
XM_034302858.1 mRNA downstream 305664 1784803 ~ 1806551 (+) False psip1a
TU45743 other upstream 309918 1166040 ~ 1168639 (+) False trmo
TU45723 other upstream 349175 1102820 ~ 1129382 (+) False coro2a
TU45707 other upstream 413226 1063972 ~ 1065331 (+) True G38577
TU45582 other upstream 733573 722127 ~ 744984 (+) False mtap
XR_004577897.1 other upstream 789054 689114 ~ 689503 (+) True LOC117596906
TU45964 other downstream 504518 1983657 ~ 1997252 (+) False cdk2ap2
TU45993 other downstream 606326 2085465 ~ 2091306 (+) False stox2a
TU45994 other downstream 606326 2085465 ~ 2090841 (+) False stox2a
TU45995 other downstream 606326 2085465 ~ 2091221 (+) False stox2a
XR_004577910.1 other downstream 686484 2165623 ~ 2165784 (+) True LOC113546173

Expression Profile