Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU45890 |
| length | 252 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G38709 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1763871 ~ 1764353 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU45772 | lncRNA | upstream | 128904 | 1272968 ~ 1634967 (+) | False | G38608 |
| TU45865 | lncRNA | upstream | 242617 | 1498168 ~ 1521254 (+) | True | G38687 |
| TU45857 | lncRNA | upstream | 284732 | 1478557 ~ 1479139 (+) | True | G38681 |
| TU45850 | lncRNA | upstream | 299434 | 1462462 ~ 1464437 (+) | False | G38676 |
| TU45851 | lncRNA | upstream | 300793 | 1462462 ~ 1463078 (+) | True | G38676 |
| TU45903 | lncRNA | downstream | 42281 | 1806634 ~ 1814009 (+) | True | G38721 |
| TU45970 | lncRNA | downstream | 157485 | 1921838 ~ 1975630 (+) | True | G38758 |
| TU45971 | lncRNA | downstream | 160971 | 1925324 ~ 1928330 (+) | True | G38759 |
| TU45967 | lncRNA | downstream | 175627 | 1939980 ~ 1941750 (+) | True | G38756 |
| TU45974 | lncRNA | downstream | 177492 | 1941845 ~ 1966544 (+) | True | G38761 |
| XM_034302883.1 | mRNA | upstream | 179949 | 1394197 ~ 1583922 (+) | True | bnc2 |
| XM_026911049.2 | mRNA | upstream | 179949 | 1514212 ~ 1583922 (+) | False | bnc2 |
| XM_034302884.1 | mRNA | upstream | 180667 | 1394197 ~ 1583204 (+) | False | bnc2 |
| XM_034302578.1 | mRNA | upstream | 505915 | 1249073 ~ 1257956 (+) | True | foxe1 |
| XM_034303180.1 | mRNA | upstream | 539270 | 1194219 ~ 1224601 (+) | True | sh3gl2a |
| XM_034302861.1 | mRNA | downstream | 20187 | 1784540 ~ 1806551 (+) | True | psip1a |
| XM_034302857.1 | mRNA | downstream | 20315 | 1784668 ~ 1806551 (+) | False | psip1a |
| XM_034302860.1 | mRNA | downstream | 20328 | 1784681 ~ 1806551 (+) | False | psip1a |
| XM_034302858.1 | mRNA | downstream | 20450 | 1784803 ~ 1806551 (+) | False | psip1a |
| XM_034302859.1 | mRNA | downstream | 20573 | 1784926 ~ 1806551 (+) | False | psip1a |
| TU45743 | other | upstream | 595232 | 1166040 ~ 1168639 (+) | False | trmo |
| TU45723 | other | upstream | 634489 | 1102820 ~ 1129382 (+) | False | coro2a |
| TU45707 | other | upstream | 698540 | 1063972 ~ 1065331 (+) | True | G38577 |
| TU45582 | other | upstream | 1018887 | 722127 ~ 744984 (+) | False | mtap |
| XR_004577897.1 | other | upstream | 1074368 | 689114 ~ 689503 (+) | True | LOC117596906 |
| TU45964 | other | downstream | 219304 | 1983657 ~ 1997252 (+) | False | cdk2ap2 |
| TU45993 | other | downstream | 321112 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU45994 | other | downstream | 321112 | 2085465 ~ 2090841 (+) | False | stox2a |
| TU45995 | other | downstream | 321112 | 2085465 ~ 2091221 (+) | False | stox2a |
| XR_004577910.1 | other | downstream | 401270 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
