RNA id: TU45964


Basic Information

Item Value
RNA id TU45964
length 1054
RNA type TUCP
GC content 0.44
exon number 4
gene id cdk2ap2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1983647 ~ 1997265 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGTGGTTTGCCATTTTCGGCTTTTTGACAGAGCTCCggttttcttttcctctgttcTCTATTCCGTGTgcttccttccttgtttgtttgtttgtttatttgttttaaaaacattactaCTTCTTTTACTAGAGTTTTGTTATTACTGCGAAGATCATTTCTGTCTGTAGAAAGGTTTAAAATCTTCAGTTATAAGCCTTAGGTGTAAATAAAGATAGTTGGTAGAATCGGTGTTAGCCTTTTGCTAGCGGCTTTGTTTAGTAAAGAAGGTTAGCATAGCGCTTAGCCTAGCTTAGCTTAGCCGTAGCTTAGCTTAAGCTAGCACTTTCATTACCTTTGGAGTTAGTATAAATGAAAGTAAGTGACAAAGTTGGATATTTGTGTTTAGGAGAAGGACAGGTTGTGTAATTGTATCATAGTTTCAGTGTTATTGTGAGTTTTTGTGCAATACTCAgggttaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgccttgtGCACTCACTGAACCCCTTTAAAACTTGAATATACAAAACGGAGCAGTATAGTGAGCTCAGTATGAGTTATAAACCCATCGCTCCAGCTCCTGCAGGCTCCAATCACACACCTCCAGgGTCATGCGGCTCGTCTCCGTCTCTGCCCTCGGCCTCCACCTTCAGACCGGCGTTCAGCGACTTCGGTCCACCGTCCATGGGCTTCGTACAGCCAGTGAAAGTGTCTCAGGGCTCCACCTACAGCGAGCTGCTGTCTGTGATAGAGGAGATGAGTCGAGAAATCAGACCCACGTACGCCGGCAGTAAAAGCGCCATGGAGAGACTGAAGAGAGGAATCATCCACGCCCGAGCTCTAGTGAGAGAGTGTCTAGCTGAAACCGAGCGCAGCGCTCGcacataacacacacccacacctctctgtatatctctctctctctcttattctctctctcacacacttttacacacctCTGTTCCACATAATTACTTTTGTAatttcaaactttttgcagttctgtatttaaatgcaaaaaaactcCAATAAAAATCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45970 lncRNA upstream 8027 1921838 ~ 1975630 (+) True G38758
TU45974 lncRNA upstream 17113 1941845 ~ 1966544 (+) True G38761
TU45967 lncRNA upstream 41907 1939980 ~ 1941750 (+) True G38756
TU45971 lncRNA upstream 55327 1925324 ~ 1928330 (+) True G38759
TU45903 lncRNA upstream 169648 1806634 ~ 1814009 (+) True G38721
TU46013 lncRNA downstream 58399 2055651 ~ 2056825 (+) True G38796
TU46037 lncRNA downstream 126209 2123461 ~ 2124718 (+) False G38812
TU46035 lncRNA downstream 126818 2124070 ~ 2126667 (+) True G38812
TU46052 lncRNA downstream 167918 2165170 ~ 2165485 (+) True G38826
TU46126 lncRNA downstream 314399 2311651 ~ 2312451 (+) True G38895
XM_034302855.1 mRNA upstream 43731 1920162 ~ 1939926 (+) True si:dkey-117m1.4
XM_034302869.1 mRNA upstream 76005 1898791 ~ 1907652 (+) True cntf
XM_026911048.2 mRNA upstream 91841 1881330 ~ 1891816 (+) True si:ch211-113e8.10
XM_034302856.1 mRNA upstream 91841 1881331 ~ 1891816 (+) False si:ch211-113e8.10
XM_026911037.2 mRNA upstream 110669 1864215 ~ 1872988 (+) True LOC113524707
XM_026932237.2 mRNA downstream 17696 2014948 ~ 2018960 (+) True ing2
XM_026941226.2 mRNA downstream 28236 2025488 ~ 2091343 (+) False stox2a
XM_026941234.2 mRNA downstream 50776 2048028 ~ 2091343 (+) True stox2a
XM_034302867.1 mRNA downstream 111816 2109068 ~ 2118767 (+) True tmem134
XM_034302866.1 mRNA downstream 111816 2109068 ~ 2118767 (+) False tmem134
TU45743 other upstream 815018 1166040 ~ 1168639 (+) False trmo
TU45723 other upstream 854275 1102820 ~ 1129382 (+) False coro2a
TU45707 other upstream 918326 1063972 ~ 1065331 (+) True G38577
TU45582 other upstream 1238673 722127 ~ 744984 (+) False mtap
XR_004577897.1 other upstream 1294154 689114 ~ 689503 (+) True LOC117596906
TU45993 other downstream 88213 2085465 ~ 2091306 (+) False stox2a
TU45994 other downstream 88213 2085465 ~ 2090841 (+) False stox2a
TU45995 other downstream 88213 2085465 ~ 2091221 (+) False stox2a
XR_004577910.1 other downstream 168371 2165623 ~ 2165784 (+) True LOC113546173
TU47789 other downstream 1834697 3831949 ~ 3834611 (+) False LOC113545357

Expression Profile