RNA id: XM_026941234.2


Basic Information

Item Value
RNA id XM_026941234.2
length 4699
RNA type mRNA
GC content 0.51
exon number 4
gene id stox2a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2025488 ~ 2091343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctcatacacacacactcacacacacacacaccctatcaGCGGAAGGTGCTGGCAGTAGCAGCAGAGGAAGAAGGGATGCAGgcgtgtgaatgagtgagtgtccTCCTTCAGCGTGGATTTACTGAACAAAAGAGGAGCAGCgtctctcattttattttagcctccatcttttttctcctccGTCTCTCATCCATCGGCttgctggtgctggtggtgctggtggtcTTGTTGTTTTTCGAGGCTGGAGGAGAACGGAGGACAAGTGCCCCTGCCTTCTGTTTCCTGCTTCACATTTGCGCTCGTACAGTGTTTTTTGAGGTCGCCTCCTCCTCGAGGATTGCACTCGTTTTTTTCGTGTTCTCTCTTTCCCAGCGGAGGCCTTTTGTCTCGGTGCGGCGTTGAACGGAGCTATTGTTGGACACACAGGCCTCgcgctgctctctctctctctctctctctctctctctttctctctccctccgcagtatccttccctccctccctccctccctcttaCTCCATCCTCTCATTCCGAGGCACCTTGCTTAAATCCGGTATCCATCCTTCTGTCCATCATTCTTAATGTGTGTTCTGCGGAGTGTGTATCCCGATGTTTGGCTTCGGGTCATCCGGATTGGCTCAAGCCGAGCCTGTGTGTCGttcctagtgtgtgtgtgcgtgtgtgtgtgtgcgagtgtgtgtgaagaaaccATGCATCTAGCCTGATGCCAGGACCGGGGTGCCCCATTCCAATGTGGGAGGACTAAAGCGTCACATCTGCACCCCCCCTTCCTCCCTACCCCTTTACCCCTTTACCCCCTTGCTCCCTCACCCCCTTTTTTGCCCCTTTCCCATCCTGTCCCCTCCAACGCAACGATGAAGAAAACGCGCAACCTGCGGCGGGCATGGCCCGGTCCAGACGGACCCGATTTGGGCTCCGATCGCGACAAGGACTACCGGCTCCACAAGCACTTCCCCCCTTCTCTCCCCCCTCTTGCGCCCTACATCGCTCAAGGTGACGTGTCCCCCATCAGCATGTCTCCGATCAGCCAGTCTCAGTTTATTCCGCTCGGCGAGATTCTGTGTTTGGCCATTTCAGCCATGAACTCAGCACGCAAGCCTGTTACACAGGACGCCCTGATGGAGCACCTGACCACCTGCTTcccagGTGTACCCACACCGAGTCCGGAGATCCTGCGTCACACACTCAACATGCTGGTTCGAGAGCGGAAGATCTACCCCACACCTGAGGGCTACTTCATCGTCACACCTCAAACTTACTTCATCACTCCTTCCCTCATTCGCACCAACAGCAAATGGTACCACCTGGATGATcggcaacagcagcaacaacaacaacagcagcagcagcaacaacagcaacaacaacaacagcaacaacaacagcagcagcaacaacaacagcaacagcagtgtACATCACCACAGTCTGGCACAATCACCCCTTCCACATCGGGCTGTGTGCGTGAAAGACTAAACCACAAAAACCACTGCGATTCTTACAACTCCTACCGTGACGAGGTGCCTAGCAATCACACCACGCTTCAAAGGAAGTCACCAAAAGAACCTAAAGGAGATCCTCCCTCATACCCACAGCCCCCACCTCCTCCAGCAACCACGCAACACCCATCAGATCCAGACAAGAGTAGGACCAATCCTTCCTTTACATATAAGACGGACACTTTGACCAAGAAGAAGGAAGGGAGTACTGGGGGCAGCAGCGAAAGGCAATCAAAAAAGTTTGGGTTGAAGCTTTTCCGCCTGAGCTTCAGGaaagacaaaacaaagcagCTGGCAACCTTTTCTGCACAGTTCCCACCGGAGGAATGGCCTCTGAGGGATGAGGACACACCATCTTCTGTTTCCATCCCCCGcgaggtggagatggagatcATCCGGCGTATCAATCCAGACCTGACGGTGGAAAACGTGGCACGCCATACAGCGGTGATGAAGCGTCTAGAAGAGGAACGTGCCCAGCGCTGTAAGGCGAATTCATCTGCTCAGCACAGTGCCCGAAGCCGTCGCAGCCGAGGTCATCGTCGTGTCCCACATGGAAAATCACGCTCGCATAGTAAGACTCGTGCCTCTCGCGGTGATCCATCTGAGGGCTCCAATCTTGACCTGGCGGCGGTTGGATTGGATAGGGATTACAGATTCTTCAGTCAGTCACTGGTGCGCTCTCCCAGGGAGGGAATGTATACAGTAGAGCGTAGGAGTGGTGCTGCCTACCTCGTCCACAGCAACCCTAACATTGCTGAATCTTATTTCCCAGTTACCCCTGAATGGGACGTATCAGGGGAGCTAGCAAAGAGGCGGACAGAAATGCCATTCCCAGAGCCTTCACGTGGGACTTCCCATTCCAGAGTGCATCGGAGTCACAGCCACACACAGGACCGCAAATCTCGGAATGAACGGACGGATAAAGCCAAGGAAAGATCGCGATCCATGGACAACTCCAAAGGCCCACTGGGGGGTGGAAGCTCCCTGTTAGGCCCTCCTGAAGACTACGATCGCAGTCCGGATCACCGAAGCCGCTACTACACCGATGATGGGACGCTAAGGGCCTCATCACAAAAATCGTCCCACTATTCACGCATTATGTTTTCGGCTGCTAAGTTCAGCTCCGAGATATCTGTTCCTGATATGGGCAAGATGAGCCTGGACACTCCTTTGGAGCGAAACAAGAGCAGGGACAGCCTGCCAGCCTACAGCGACATGAAGGCCCTGTCGCCCAAGCCTCTGGCAGATGACTACTTCCAGTGCAATACGTCGAATGAAACAATCCTAACAGCCCCGTTACCACTGGGCAAATCCGACCATGACACTTTAACGCCATCAGACGGAATCTGCAAGGGATCACCGGCTGATCGGCAGACGCCGCACCTCACTTCCCCTCATCCCATGGAGTACAAAGAGGATGCCTCCACCTCCAAGGGACACAGCGGATCTGGTAAACCCACGCCAAGCCAGACTCCGGAGCCTAATTCTAGTGGACGTTTAATACAGCATCAGCAACACAATGCTGACCCTgggggaggaggtggaggtggaagtGGTGTGATGGTGGATAAGAGGAAAGAGATTTTCAGCAAGGACACTTTGTTCAAACCACCACACAGCATCTTGACAATGAGCTACGTTGACACTGGCTACTCTAAGTCAGGCACATTGCGAAAGACGCCGCACATGAAATCATCTGAGGTGCTTGATACTCTAGAACCCCAGCCTCCGCCTAACTCTGGCCCTTCACCTGCATCCGCCCCAGCGCCTACAGGTCCAGAACAGGGAATCCCATCTACATCAGAAGCCGCTTTTGACTACTACAACGTGTCAGATGACGACGACGAGGAGGTGGAGGAAGCCTCTCATAAAGAGACGGCTCCACCAGAGGGAAAGGTTAGGACCGGGGGAGGAGAGAGTGGTGGTGGGGGTGGAGTCagtgttgggggtggggttgggggcGGGACTATGCAGTGGCTGCTGGAACGAGAGAAGGAGCGCGATCTACAGAGGAAGTTTGAGAATAACCTGACTCTGCTGAGCCCCAAGGAGAACGAGAACACCAACAGCCAGAAGTCGGCGCACTCGGCACGCCTGGACAGTATGGACAGCAGCAGTGTGACCGTAGACAGTGGATTCAACTCACCACGGACGCGGGAAAGTTTGGCGTCCAACACCTCGAGTATCGTGGAGAGTAACCGGCGTCAGAATCCGGCGCTGAGTCCGGGTCACATGGGCAGCTCCCTGATCGGCGCTCCGTTCTCCTTCCGCTCCGTGGCTGAGGCTCCCAGCACGCAGGCCGAGAAACTGCAGAAACCCAACAACTGCCTCGCCTCCATCACCAGCGTCTGACCCGGCTCGAGGAGAAACACGCAAAAAACACGCAAACGCTCGGGCCgagaataaacacaaaacaaaaacaaacaaacaaaaaaaaaaacaaacactcgGGCCGTGACAAGCACCTCAAACCTCCACGGGGACTGTTAAACCCAACAGGTATGGCTTCCACTGACTGTTCTACAGCATCGCAACAAATCActgcaaaaaagaagaaaaaaaaaataaaagaaggagaaaaaaatagtcaaaatggaaatgaatcatGATTTATCTCAATCAGGAAATTCTCCAGTTATTTTCATAACCCGGGATAGTCTCGAAGTATctgctcatgtttttttttttcagtaataattgttgtttttttttttttcatcctgctGATGGATTGCACTCTGACATGAGGATCCCGACAGTTTTAAAGAGATCAAAAATCGTCACAGGGAAGAAAGCCGGTATGAGATCTCAACATTAAATTTCACGATTCATAATGTTGTATGATAAAAAACCAGAGAAATAAAGTCATTCTTCATGACGGCGTTAGCTCTGTTGATAAAGTAATAAGAACTGGAGTCATACTTTTCATattgcttattaaaaaaataaataaatagtactTAGATTGACTTactataaaagaaaacaaacttaTTCTGAAATTAAAGGATTCATTTAgggtttaaagaaaaaacatgaggactgttgactttttttttttcttttttcagttgaAATCCCAGACGAGGCAAAGTGTGTAACGTGTGTGACTGTACATCACTTAACGAATTTACCTGTTTCATTAAAGTTTCTATCTGACATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45970 lncRNA upstream 72398 1921838 ~ 1975630 (+) True G38758
TU45974 lncRNA upstream 81484 1941845 ~ 1966544 (+) True G38761
TU45967 lncRNA upstream 106278 1939980 ~ 1941750 (+) True G38756
TU45971 lncRNA upstream 119698 1925324 ~ 1928330 (+) True G38759
TU45903 lncRNA upstream 234019 1806634 ~ 1814009 (+) True G38721
TU46037 lncRNA downstream 32118 2123461 ~ 2124718 (+) False G38812
TU46035 lncRNA downstream 32727 2124070 ~ 2126667 (+) True G38812
TU46052 lncRNA downstream 73827 2165170 ~ 2165485 (+) True G38826
TU46126 lncRNA downstream 220308 2311651 ~ 2312451 (+) True G38895
TU46183 lncRNA downstream 319858 2411201 ~ 2426600 (+) True G38948
XM_026932237.2 mRNA upstream 29068 2014948 ~ 2018960 (+) True ing2
XM_034302872.1 mRNA upstream 50763 1983647 ~ 1997265 (+) True cdk2ap2
XM_034302855.1 mRNA upstream 108102 1920162 ~ 1939926 (+) True si:dkey-117m1.4
XM_034302869.1 mRNA upstream 140376 1898791 ~ 1907652 (+) True cntf
XM_034302856.1 mRNA upstream 156212 1881331 ~ 1891816 (+) False si:ch211-113e8.10
XM_034302867.1 mRNA downstream 17725 2109068 ~ 2118767 (+) True tmem134
XM_034302866.1 mRNA downstream 17725 2109068 ~ 2118767 (+) False tmem134
XM_034302865.1 mRNA downstream 60586 2151929 ~ 2163692 (+) True dctd
XM_034302864.1 mRNA downstream 61236 2152579 ~ 2163692 (+) False dctd
XM_034302870.1 mRNA downstream 83244 2174587 ~ 2184648 (+) True LOC113544637
TU45964 other upstream 50776 1983657 ~ 1997252 (+) False cdk2ap2
TU45743 other upstream 879389 1166040 ~ 1168639 (+) False trmo
TU45723 other upstream 918646 1102820 ~ 1129382 (+) False coro2a
TU45707 other upstream 982697 1063972 ~ 1065331 (+) True G38577
TU45582 other upstream 1303044 722127 ~ 744984 (+) False mtap
XR_004577910.1 other downstream 74280 2165623 ~ 2165784 (+) True LOC113546173
TU47789 other downstream 1740606 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 3172239 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 3227191 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 5112607 7203950 ~ 7221023 (+) True G42075

Expression Profile