RNA id: TU46035


Basic Information

Item Value
RNA id TU46035
length 2598
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G38812
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2123461 ~ 2126667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAATCTAAAAATCATGTATATGTCAAAATCACTGAAGGCTTCAAAACCTTGACTGCTTAACATTTCCGCGTTACAGTTTAGTGTTTCTCGGCGCTAACACACGGATTCACGCTAACAGCAAGAGTGCGTGTGCAGGAAAAACACCAAACTGTGTATTACATGAGAACTCCAGAACTACAGCGATCACAGTGATACTTCTGCTTCACCAAGTGTTTAGAAATGAAACCTCTATAAAGTAATAAGCATTTCTATTGTCTTAATGCAACTGTAGGAATGAAAAGGCGACCCGGTGCAAAGCATTTCTCATCTCACAAGCTAGGCTTCACTGTTAACCatgtaaaaaaatcatgataaataataatcGCCCAGACCTGATCACATTCACGCTAGCAGATGACAAGTCTAGTTTGTCTACAGGATGTGGGCGCGTAGCGACGGCTACTGTTCTCACTcataggtgtttttttttgttctgatgAGAAACTGTCGTTGCTATATACAGCTTCGAAAGCTAACTACTAAAACACAGATTCTCAcaacacacttttctgagatattgcatGTATCTTTTactaacgtttttttttttaaaaatagcaattaCAAACTCTGTAACGCAGCTGcgttgatgttaaaattttgtttcaGTTTAGAGTAATTTGTAGATATAAAAActtttcatagttttttttttttttttaatgcagctcTACTGTATTGCTGAACGTCAGCAAACCTGTATATATCACGTATCATAAAAATATCTTGTAaaaagtatcgtgatatgatcaTTTTGTCACATCACCCACCCCTACAGGTAGGAAGTAAAGCTGTGATTGGGGAACTGAAGACATGTTGGATCTCATGCGTGATCCACTGGATCCGTCTGAGGAATCTGAAATCGTGTCTCAGTGTTCACATGTGCGgagaaaatgagcaaaagaaaaagggaaaactAGCATTtacaccatttcaggtttaaggagagtagaaacagtgttatttaatcactttctattCATCATTAccattaatattatttgtaaagtgttaaatcTGACaatcttttttaatctgtgtaatcttttttaggaaaaaacactgaaagtgtcttttttttctttttttaaatcaattttggGTGAAATTTCTCAGTGGCTTCTgtagtaaatatatttaactgatGCTAATTATACATGTCTAATGATAGCTAAGTCGAACATACAGTACActgttagattttatttcacattaatgaactcaaattattctgatttaaaCTTTTGCAGAAAGCGAGAGCGCGCCGCGAGTGCAGGCGAGAGCGTGTGTGATGGAGgggagtgggcggggcttacagGTGGTATCTCAGCCAGTTGAAAACACCTGAGCGAATCGTTCCGGACTCACACGTCGATTTGCTCGTGTCCTGTTTCATTGTGGAGAAACAGACTTGGTGTATTTTTGCGTGAGAACTCATTAACACAACGCTGATGTTAAACTGATGAGCTCCTACGCAAAAAAGCgtttttggtaaaataatacaGCGTAATCAGAGCGACATCACTGGATATCATGGCAGTGTAATATCGTCTACAGACGATTCAACGATCGTtacgtcacgtcacgtcacgtcacaCATCCTTTCCCAAGCGTTCACTTTGATCCAGAAGTGAACCAGTTACGCAGATGTGTGTAGCGTAATCTACTCCATCTCTCTCAGACTCCTGGTTTTATTGTATCATCATtagtttgggtttaaatccagtCTGTCCTTTCTCCACTGGGTTTAAAGTGAAAGCCGTCTGCTTTGCTTTACACCAGGCCAcctattagcattagcatgcgTTTAGCTGTTATACCACTTTTCTATGATTCTACAATCTCTGCTTTCGTATGATTAGCATTACCACTACCTGAGAAATGCGAACACAACTTTGTTATTAAGGATGCATCGATAcctgttgttatttttgttttttttccagagtaCATTTTCTTTTGTACTCGTCGATACCGATAGCAGAATGAGTAAACTACTTAGTATTGATCAATCAAGGGAACATTTTattcagctgtgtgtatgcTGGCTGCTGCCGTGTGCCGCTAGCGATGAACTCCTTGTGCTTTTcatgtttaagatgtttagAGAGTAGTTTTAATAGAGCGCATGCGGAGCAGTATCAGCTCGCACGGTCATTAAACATGAGCTCAGGATGCTGTATTTTAAAGGccataagatgttttatcaggttacttgtattgtagggAGATGCCTTAGTTCCTCATCTTGATATTTTCAAACAGCACAGCTTGCACAATTTCCTGTCGTCTGTTCGTCAGCGCAACAACTTACAGAAGGATGACGTCACACCGTACGACCCCCTCGTAATGGACATTCGTACCGGATTACGAGTAATTCAGCACAGTATCGGACCGAAACCTGATACCAGCGTcggtatcgatgcatccctaaCTGCTACAATGAAAGAAGCTAGTTTTGATGAAGTCTTGTGCCATAAAGTAAGATCTGTGATCCTGTAATTAATACTTTACTTTGAGTGCAATGAACCGTGAATCAGTCTCTGAGGTAattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46013 lncRNA upstream 67245 2055651 ~ 2056825 (+) True G38796
TU45970 lncRNA upstream 148440 1921838 ~ 1975630 (+) True G38758
TU46052 lncRNA downstream 38503 2165170 ~ 2165485 (+) True G38826
TU46126 lncRNA downstream 184984 2311651 ~ 2312451 (+) True G38895
TU46183 lncRNA downstream 284534 2411201 ~ 2426600 (+) True G38948
TU46198 lncRNA downstream 301145 2427812 ~ 2431087 (+) True G38962
XR_004577844.1 lncRNA downstream 1274128 3400795 ~ 3403106 (+) True LOC117596855
XM_034302867.1 mRNA upstream 5303 2109068 ~ 2118767 (+) True tmem134
XM_034302866.1 mRNA upstream 5303 2109068 ~ 2118767 (+) False tmem134
XM_026941226.2 mRNA upstream 32727 2025488 ~ 2091343 (+) False stox2a
XM_026941234.2 mRNA upstream 32727 2048028 ~ 2091343 (+) True stox2a
XM_026932237.2 mRNA upstream 105110 2014948 ~ 2018960 (+) True ing2
XM_034302865.1 mRNA downstream 25262 2151929 ~ 2163692 (+) True dctd
XM_034302864.1 mRNA downstream 25912 2152579 ~ 2163692 (+) False dctd
XM_034302870.1 mRNA downstream 47920 2174587 ~ 2184648 (+) True LOC113544637
XM_034302871.1 mRNA downstream 67282 2193949 ~ 2199535 (+) True LOC113541301
XM_026933437.2 mRNA downstream 1066634 3193301 ~ 3253363 (+) True vegfc
TU45993 other upstream 32764 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 32849 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 33229 2085465 ~ 2090841 (+) False stox2a
TU45964 other upstream 126818 1983657 ~ 1997252 (+) False cdk2ap2
TU45743 other upstream 955431 1166040 ~ 1168639 (+) False trmo
XR_004577910.1 other downstream 38956 2165623 ~ 2165784 (+) True LOC113546173
TU47789 other downstream 1705282 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 3136915 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 3191867 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 5077283 7203950 ~ 7221023 (+) True G42075

Expression Profile