RNA id: TU46052


Basic Information

Item Value
RNA id TU46052
length 316
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G38826
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2165170 ~ 2165485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCAACCGAAAAAGCTAGGGCTAAATACTTCTCTGATATAATCAGtaaacattgtcacaaaccTAAAATTCTGTTCAGCATTATAAATTCCATCATCAACCCTGTATCTCTTATGATATTGAAGCATCCACTGATATATCTGAGAGATTTTCGAAGCTTTGCCTGACTGCTCAGACGCCATAGCTACCTTTAGCCAATTTCAACAGGTTTCTTTTTCTGAATCGAGGAACATTTGTTATACATATGAAACTCACAACTTCCCCCCATGATGTTGTCCCCACCCACATCATAAAGGATACTTTCGATACAATTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46035 lncRNA upstream 38503 2124070 ~ 2126667 (+) True G38812
TU46037 lncRNA upstream 40452 2123461 ~ 2124718 (+) False G38812
TU46013 lncRNA upstream 108345 2055651 ~ 2056825 (+) True G38796
TU45970 lncRNA upstream 189540 1921838 ~ 1975630 (+) True G38758
TU46126 lncRNA downstream 146166 2311651 ~ 2312451 (+) True G38895
TU46183 lncRNA downstream 245716 2411201 ~ 2426600 (+) True G38948
TU46198 lncRNA downstream 262327 2427812 ~ 2431087 (+) True G38962
XR_004577844.1 lncRNA downstream 1235310 3400795 ~ 3403106 (+) True LOC117596855
XR_004577906.1 lncRNA downstream 1349616 3515101 ~ 3525121 (+) True LOC117596918
XM_034302865.1 mRNA upstream 1478 2151929 ~ 2163692 (+) True dctd
XM_034302864.1 mRNA upstream 1478 2152579 ~ 2163692 (+) False dctd
XM_034302867.1 mRNA upstream 46403 2109068 ~ 2118767 (+) True tmem134
XM_034302866.1 mRNA upstream 46403 2109068 ~ 2118767 (+) False tmem134
XM_026941226.2 mRNA upstream 73827 2025488 ~ 2091343 (+) False stox2a
XM_034302870.1 mRNA downstream 9102 2174587 ~ 2184648 (+) True LOC113544637
XM_034302871.1 mRNA downstream 28464 2193949 ~ 2199535 (+) True LOC113541301
XM_026933437.2 mRNA downstream 1027816 3193301 ~ 3253363 (+) True vegfc
XM_026941131.2 mRNA downstream 1131048 3296533 ~ 3306323 (+) True LOC113543098
XM_034303035.1 mRNA downstream 1142349 3307834 ~ 3325642 (+) False asb5b
TU45993 other upstream 73864 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 73949 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 74329 2085465 ~ 2090841 (+) False stox2a
TU45964 other upstream 167918 1983657 ~ 1997252 (+) False cdk2ap2
TU45743 other upstream 996531 1166040 ~ 1168639 (+) False trmo
XR_004577910.1 other downstream 138 2165623 ~ 2165784 (+) True LOC113546173
TU47789 other downstream 1666464 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 3098097 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 3153049 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 5038465 7203950 ~ 7221023 (+) True G42075

Expression Profile