RNA id: TU46198


Basic Information

Item Value
RNA id TU46198
length 2019
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G38962
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2427812 ~ 2431087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaggtttccatttcactgcaagttatacactgtatataattcTGTATCTGACAATAAAAATCTTACATTTTTAATCTAATATTGtaagaaagtgtgaaaattggttgctTAATGTACGTTACATGCTTCATATTAACTTCGTTATTATTAGATTAGCAGCTCAAGCTAACTGTATGCTCACCTGAGACACCACCATATACCTACATACCtatatatctgtaatataataatttcttctaactagttaaacagaaatgaaataacaGACGAATCAGTTGTTTTATGTTTCACACCAGGCTTTatgttagcagattagcagcaCAAGCTACCTGTAACAGCTACATGCACTCTGCAGAGGCACagacgatctctgctacttccttccaagctttatttttcttcataatgtctctaacGCATTTAATAACAGGTCGTATAGTACAGAATGAGATGATTATaggtttttcttctgtttttttcttcccagtGCGGCATTACACAGGAAATGATTGCAGGAAGAAACTACAGGTGTGAGAGAGCAAATGGAAAAACGTCAGATCACACGATATTGCTCCATAAGACAGatccgaggaatcattcgagctaATCGTTTGGATTTCTCGCTTTACTGCGTCACAGCTAATTAgcataaagttgagaaaatctcagctcACATGTCGCTTGTCACTAGTGTGAACGCAGTGTAAAGAGTTCATCTCCTCCGCTGATCATAGCAACCGTTTCCTCTCCATCACCTAACTTGCAACAGAAAGTTCAGCCAATCACGTTGCTCGGTACGCAGCGCTGAGAGCGATTAGCGTCCACACGCTTTCTGTTGAGCCCCAGTGAGCCCCAGACCACCAACATCACAAGGACCAAGGATCGGTTCTCTAGAAACAGTACTGAACTCTCACAACAAACAACCCCAGAGTATGAAAAAACCCAGCAAATGTGAAAAGGACCTTGAGAGAAATGTAGTAACTTGATGTAGCTATAAGATCCCGAGCGTTCTATTTTACTGCCTTGGAGTGGAGAcatgacaataaaatattttgcattttttctaaGGATTCATGCTGTGCTCGAATACCAAATGTAACAATATGAGACTTTATTCAATGCAGAAAGGCTCAGCACGCACCAGCAGGAGATCGGATcaaacctaaacacacacacacacacacacacacacacactcacacacaatagATATGGATGATACTCACTCAGTACAGAGTGAACTAATGTAGTCGGGTTTCACTCAGTctactgaaaagcaaaaaattaccatttttttttctttagcggTTCTGAATTCAAACAGCAAAACACAATATATCGTATGTTGCCTTATGTTATATGTTGTGCTTCAAAAATGTTTCaagaactttatttaaaaagggATGAATCGATACCTACACTGCGCTCATTTCCTCGTACCTGTAAAAGCATTAACATCTGATACTAACTCTTACTACTTGACGTAAACCTAGTGTACATTGTTGCACTAATGTCTACATGACACGAATCTGGACGTATTTCACGATCAAAGACgcaaaatatcaagaggaggaactacagcatcttcctacaacacaagcgataaaacatcttaaacataaaactcaggaCAAGGAGTTCATCGCTAGCGGAAAATAACAGCTAGGCAAAGCTAGGTGAGCGGAACAGCTAACAGCTCTTATGCTGTGTGTCAGTTTTGTGAATTAACGAAGAATTCTGaggcaatgaaaacaaaaagcgTACTTTAGCTACGCAACCCTACTCCCTCCAAGCTAACTaacgtagctagctaatgctctTCGTTTAAAATTAACTCGCAAACATTGTGAAGAACGAAACTAGTAGTGTAAGTGTGTTGGATTTTCATGGCTGCTGTTTAatagagctaaataaaatgtttcgtAAAGTCCCTGAagagtaggttactcatttcgcTATTCAAAATATACATACTCAAACACATAgacagtctggaaaaaaaaaaaaacgctggtTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46183 lncRNA upstream 1212 2411201 ~ 2426600 (+) True G38948
TU46126 lncRNA upstream 115361 2311651 ~ 2312451 (+) True G38895
TU46052 lncRNA upstream 262327 2165170 ~ 2165485 (+) True G38826
TU46035 lncRNA upstream 301145 2124070 ~ 2126667 (+) True G38812
TU46037 lncRNA upstream 303094 2123461 ~ 2124718 (+) False G38812
XR_004577844.1 lncRNA downstream 969708 3400795 ~ 3403106 (+) True LOC117596855
XR_004577906.1 lncRNA downstream 1084014 3515101 ~ 3525121 (+) True LOC117596918
TU47566 lncRNA downstream 1084014 3515101 ~ 3525093 (+) False LOC117596918
TU47719 lncRNA downstream 1252256 3683343 ~ 3685205 (+) True G40287
TU47821 lncRNA downstream 1433609 3864696 ~ 3865000 (+) True G40374
XM_034302871.1 mRNA upstream 228277 2193949 ~ 2199535 (+) True LOC113541301
XM_034302870.1 mRNA upstream 243164 2174587 ~ 2184648 (+) True LOC113544637
XM_034302865.1 mRNA upstream 264120 2151929 ~ 2163692 (+) True dctd
XM_034302864.1 mRNA upstream 264120 2152579 ~ 2163692 (+) False dctd
XM_034302866.1 mRNA upstream 309045 2109068 ~ 2118767 (+) False tmem134
XM_026933437.2 mRNA downstream 762214 3193301 ~ 3253363 (+) True vegfc
XM_026941131.2 mRNA downstream 865446 3296533 ~ 3306323 (+) True LOC113543098
XM_034303035.1 mRNA downstream 876747 3307834 ~ 3325642 (+) False asb5b
XM_026941145.2 mRNA downstream 876748 3307835 ~ 3325585 (+) True asb5b
XM_026941154.2 mRNA downstream 876807 3307894 ~ 3325585 (+) False asb5b
XR_004577910.1 other upstream 262028 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 336506 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 336591 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 336971 2085465 ~ 2090841 (+) False stox2a
TU45964 other upstream 430560 1983657 ~ 1997252 (+) False cdk2ap2
TU47789 other downstream 1400862 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 2832495 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 2887447 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 4772863 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 5218111 7649198 ~ 7666033 (+) False naa15b

Expression Profile