RNA id: TU46616


Basic Information

Item Value
RNA id TU46616
length 885
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G39346
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1084439 ~ 1085453 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGTCTAACTGCTGTACAACCTTCGTCCTACACCCATCCAACCTTCGTCTAACAGCCATCCAACCCTCAAACAACATCTAACCCTTGTCTAACACCTGTCCAACAGTGTCCCTCGTCTGATGCCTGTCTCACTGCTGTATGATGCCCATCTGATCCTCGTCTGGCCCAGACCTCGATGAACTGCTGTCTGATCATTAACTAACACCCTTCTCACATCTAACTCTCGCCTGACGTCTGTCCAAATTTTGTCGAACATCCATCTGACTCTCAGTAACTGACCCTCGTCTGATGCCTGTCTAATCCTCACCTAAAACCTGTCTAACGCCTCGTCTTAAGACGGCTAACACGAAATTAAAGGTGACTATGTAAACAGGATTAGAACACAGCACTGCAGCACAACGACCGGATCTACCATAACCAAGCCCCAAAGACTACAGcaaggggtcaaaggtcagcgcCAGGGTCAGAAACGGAAGCGCAAACTGCAAATTGCGTAACGCAAGGAAAGCACAAGCACCCCGACATGATAAACACCGAGGGGCTCCCTGCTAACATCAAGCCACaccatcacaacacacacacacacacacacacacacacacacacaacagtatggTGTGTGGctccagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgggaCAGGATGTTGGTGCACTGCTGCAGTAGAGAGATGGGAGGTTTCCCCAGACTGGTGGCCAGCTGAACTCTCAGCAGCTGCTCCTTCTGGTTGGAGTTATCATGTAGAGCGTGCGCTAATGCTACCGACGCACACCAGTTAGAGAGCGAGTCCACCGAGAACAGACCCCCACACAGCAACTGACCGGCCGAGATCGactgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46618 lncRNA downstream 37686 1046243 ~ 1046753 (-) True G39348
TU46592 lncRNA downstream 77554 1005529 ~ 1006885 (-) False LOC113524614
TU46590 lncRNA downstream 91184 992958 ~ 993255 (-) True G39323
TU46564 lncRNA downstream 130332 953899 ~ 954107 (-) True G39313
TU46563 lncRNA downstream 158913 921127 ~ 925526 (-) True G39312
TU46637 lncRNA upstream 65693 1151146 ~ 1194477 (-) True G39359
TU46633 lncRNA upstream 77197 1162650 ~ 1165350 (-) False G39356
TU46634 lncRNA upstream 77197 1162650 ~ 1165350 (-) True G39356
TU46670 lncRNA upstream 85450 1170903 ~ 1171514 (-) True G39390
TU46704 lncRNA upstream 131834 1217287 ~ 1634965 (-) True G39412
XM_034301860.1 mRNA downstream 14624 1065387 ~ 1069815 (-) True ints12
XM_026910944.2 mRNA downstream 77389 1004477 ~ 1007050 (-) True LOC113524614
XM_026910937.2 mRNA downstream 146990 925951 ~ 937449 (-) True ppa2
XM_034302560.1 mRNA downstream 213086 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA downstream 216401 838511 ~ 868038 (-) True cxxc4
XM_026910962.2 mRNA upstream 60676 1146129 ~ 1153350 (-) False anp32b
XM_026910961.2 mRNA upstream 60676 1146129 ~ 1153350 (-) True anp32b
XM_034303177.1 mRNA upstream 184992 1270445 ~ 1369012 (-) True cntln
XM_034302862.1 mRNA upstream 724697 1810150 ~ 1820845 (-) True snapc3
XM_026911038.2 mRNA upstream 808133 1893586 ~ 1895099 (-) True si:ch211-113e8.11
TU45475 other downstream 768911 314981 ~ 315528 (-) True G38400
TU45455 other downstream 816640 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 823288 260769 ~ 261151 (-) False LOC117596825
TU46718 other upstream 185088 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 200355 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 207591 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 786480 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 786480 1871933 ~ 1877225 (-) False G39603

Expression Profile