RNA id: XM_034303177.1


Basic Information

Item Value
RNA id XM_034303177.1
length 4488
RNA type mRNA
GC content 0.53
exon number 30
gene id cntln
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1270445 ~ 1369012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctctcaggagggTGATGTCCtgcagagacagtgagagagtgctCCTGCTGCAGGAGGAAGTCAGGAGTCTGAGTCAGGAGCTCGCTCAGTGTCagGCGGATAAGGAGTTTGTGTGGTCGCTATGGAAACGGCTCCAGGCGGCGAATCCGGACCTGACGCAGGCCGTGAGTTTAGTGGTGGAGCGtgaGAAACAGAAAGCAGAAGCTAAAGATCGGAAAGTTCTGGAAATCCTGCAGGCGAAAGACTACAAGATCCAGGAGCTAGAGAAGgaagtgacatcacagcGACAGGAAGTGAGCAGACTCCTGCAACAGCAGCGTGTTGGTGAAGAGGAGCAGCATGTGAAGAAAGAGCTGGTAGAACTtcaacacacactgagtgatACGACACGACgcttacagGAGTGTGATGATGGGTGGAGGAGGAGGttggaggagcagcaggagcagaGCAGGAAGCAGGAGGAGACAAACAACGCCAAACTCAAGGAGTGTGATGATGGGTGGAGGAGGAGGttggaggagcagcaggagcagaGCAGGAAGCAGGAGGAGACAAACAACGCCAAACTCAAGGAGTGTGATGATGGGTGGAGGAGGAGGTTGGAGGAGCATCAGGAGCAGAGCAGGAAGCAGGAGGAGACAAACAACGCACGACTCAgggAGGTGCAGGAGGAGTTGGTGAAGGTTCAAGCTGTCAGCTCGTCTCTCTCTGTTCagctcagttcagttcagcaaaagctcagtgagagagagcagcatCTCCAGAAGCTCAGgggtgagCTGCAGGATCTTCAGTCTCTGTACGTACAGAGTGTGGCTCATGCAGGAGAGCAGGCAGAACTCATCCAGCAGCTGGAAGGTCTCAACATGGACACGCAGCAGATCCTGCAGAGCCAGGAGCGagtacacaccacacacactgcctcataccacaagttgTACAGTGAGCTGAGTGTATCCTATCAGGCTCTCCGTGTCAGTGAGGAGCAGCTGCGGCAGAGAGACGCCTGTCTCAGTGAACAGCTCAGTCAGAAGGAGCAGCAGGTCTCTGAACTTCAGCTCCAACTTCAGCAGCTCCAGCAGCTTGTAGCAGCCCAACCACTCGCCCCTGAGaagatgGAGCAGGAGTGTGTGGAGGTTGCAGAGAGTCAAGAGTGTGTGTCTCACCCCCCGTCCTCTAAGACTCAGAgctgtggaacacacacacagcagTGTTCCAGGTCTGTTTCTCCAAGCAGCAGTAGTAGAGCCTATGAGAAGAAGATCCAGCAGTTGGAGGAGCTACTCACTCTCAAGacgGCAGAGAATGAGGAGTTAAGGCGAGCTCATGCGAAGCGTCACGATCGTCTGCGTCTGATTCAGACCAACTACAGAGCGGTGAAGGAGCAGCTGAAGGAGGTGGAGGACACACACGGCCTgcccaAAGGCAGGACGAGGCGGGCTGAGCCGTGGGAGCTCCGTCAGGAGAACAGCGATGCCGTTTGGAACGAGTTGGCCTTCTTTAAACGCGAGAACAAGAAGCTCCTTGCTgagaaAACTCAGCTGGAGGAGGAGTTGGATGTGGCTCGTGTTCGAGTGGCCATGGAGCGAGCTACAGCGCAGGAGCTACGTCTGCGTCTGCACGAGGAACAGcaagAGCTGCAgctgaatgatgatgatgatgatgaggacagAGTGAGCAGCACACCACTAcctcctgtacacacactacaccgcTCTGTTAGAAAgatcaaAGTGTTGGAAAGGAAGATGGTGTGTCTGGAGAGAGACACGTTGAAGCTGCGAGAGGACAAGCAGGCCCTACAGGACGCTAACGATCTCCTGCGTAGCGAGCGGGCGGAGGTCCAGGCGGCGCTGCAGCAGGCCCGTGTGCGTGAGGAAGCGAGCCAGGCTCGGGGCAGCGCTGAGCGGGACAGGCTGCTAGGCGAGGTCCGGGCTCTACAGGCCCAGCTGGAGAAATCACACAGAGCAGAGACGGCGTCTCGGGCAGCGTTACTGAGGATCAGACAGGAAGTGGGAGTGCTGAGGGCCGAGAGGGACTTCCACAGGAACAAGACACGGCGAGGACGAGGACACGGGACACACACCCTAACACAGACCGTCTCAGTGCAGCCGAGGACACGCAGCCCCGCCAAGGACGAGTGGGAGGACATGAGTCCAGACAGTGACAGTGAGGATTTCTCGGACAGTCTGGAGAGTAAGCGTGCTGCTCGTCCTCTCCGCTCTGCTGCTCAGTCAAAGGCCTGCGCATCACTCCCTCACCGACACGCGGTCAGAGACGGCTCCACTGCAGCCAGGGCTCACGACACAGtgtctaAGCAGGACATGGccgtgaggaagaggaggaggatgatgaagaggaggagtgtgtgtgtggtgatgaagGGAGCAGgagtgtgtgaggatgcagcagtgaggaagaggagggtgATGAAGAGGAGGCGTGTGTGTGCCGTGTTCACTCAGAGGCTCGCCTGTCTGCAGCAGCAGGTCGCAGTTCTGCAGGCGGCCAGCAGGGCGGCGCAGGATGAGCGACTCaaataccaacacacacacactgaactgcagacactgacacacacactgcagaagCAGTCGTGTGAGATGGCGGTGCTGCAGCAGCAGAAGGCCGTGTTGGAGGCGGAGTTAGAGCAGTGGAGGAAGTCCCGCCTCCCTGAAGCACAACAGGCGTCAGTCACTGTGTCTGTCCCCGACCCTGACCTCCCGAACATCAGAACACTGGAGACTGAAATCAAACAGCTCAACAACAAGCTgaagagctCGAGTGCCGAGGTGAGCCGTCAGAATGCTTTGATTAAAGGCCTCAGGACGGAGCTGCATGACAGAGACCAACGCCTTAAGGAGCTACAGGACAAggtgtgtCACTGTGAGAGGGATGTGGTGATGAAGAGACAGTTGGTGGAGGATCTGCGCAGTCGGCTGAAGGTCCTGCAGGATTCAGAGCGCAGCCATCGCTCACACATCGACGAGCTGGAGAGAAAgGTGAAGAGTCAGTGTGAGGAGGCGTCCAACAGGAAGTCATTTATTGAGTCTCTGAAGAGGAGGCTGAGCGTCGCTACTCACGACAAACAGCAGTGTGAGAACACCAGCAGCACACTCCGAGACCAGATACACACTAAGgaGCAGAAGATAACAGCGCTGCAGGCTCGGTTGGTGGAGTGTGAGAGGTCAAAGGTCGAGCTGGAGCAGACAGCGACAACGCAGAtgcagcttctgaccaatcagagcacagagacgattcacacactgcagaacaaACTCACACTGGCACAGACTCAATACCAACACCTGCGTTCAgtcacacagTCTGTACATCTCTACGTCTGGTCTGGCAGGTGGTTGTGGACAGAGGTGAGAGAGACTCGAGCTGAGCttagaaagaggaggagagagaggaagaagaaggagggaTCAGGAAGAGGAGGCGTGTCCAAGAGCTCCATGGTGAAAGCTCAGTCCATCGCTGCGTCTATCCTCAATGTCAGCGCTAACGACCTGGCTAGCATCCTGGACACAGACCAGgaggAAGAGAGTGATGAAGAAGCAGATGGAGTTTGGATGAATCACATACAGCAGCTCCTACAGCAGCAGtgtCTCTCTGCAGCTGAGTTGTTGGAGGTTCTGTTGGTGAAGATGAAGGAGAGCAGGGCGCTGATGGAGGAGCTGGTTTCTCTGAGAGAGAGTCACTGAGCATGAcggaggaataaaaacacatctctccatccctccttttatttcactttattttccCTGACTTCATTTCTCAcctcactctgtttctctctcttacttATTAGCTCACTTTCCTCTTTCCATCTTTTTCTCTTACTTCCACTCCTTTTTCTGCTCTTTTCCTATCCCCTTTCCACTTTCTTTGTTTGTTCTCTATTAACTTTATCTCTTAATcgatttctctctcttttttcctctattaCTCATTCCTCTCCCAATCATCTTCTCCTCTCTTATtgacaatctctctctctctctctctctctctttcttctcctcagttcttcttgtttctcttctttcgttcttctcttctcctcacGTCTCTTTTTACTTTCTCGCCTTTTCTCTctactctctccctctcatctTATCTCCATTTTTTCccgattttatttttcatttctccatctgtcactctctctctctctctctctctctccttctttctctctgttctctttgGTGTATAACTGAAGTCTATATGAAGTCTACGTTCTAAAGTCTGTAGCTGTGTGACTGAGTGATTctttacacagtgtgtgtttggacgCACTGCgtcatcacacactctttcatcactcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcaaaCGTCAAGTTTCTGTACAGATGTAGTGTGTTTACACGATCAGTACCCGCATGAATTAAACTAATTTATGGAGTGTGTTTAta

Function

GO: NA

KEGG:

id description
K16467 CNTLN; centlein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46637 lncRNA downstream 75968 1151146 ~ 1194477 (-) True G39359
TU46670 lncRNA downstream 98931 1170903 ~ 1171514 (-) True G39390
TU46633 lncRNA downstream 105095 1162650 ~ 1165350 (-) False G39356
TU46634 lncRNA downstream 105095 1162650 ~ 1165350 (-) True G39356
TU46616 lncRNA downstream 184992 1084439 ~ 1085453 (-) True G39346
TU46773 lncRNA upstream 110467 1479479 ~ 1479890 (-) True G39476
TU46781 lncRNA upstream 121673 1490685 ~ 1493920 (-) True G39483
TU46782 lncRNA upstream 125609 1494621 ~ 1496066 (-) True G39484
TU46824 lncRNA upstream 186716 1555728 ~ 1556545 (-) True G39521
TU46836 lncRNA upstream 214976 1583988 ~ 1679803 (-) True G39533
XM_026910962.2 mRNA downstream 117095 1146129 ~ 1153350 (-) False anp32b
XM_026910961.2 mRNA downstream 117095 1146129 ~ 1153350 (-) True anp32b
XM_034301860.1 mRNA downstream 200630 1065387 ~ 1069815 (-) True ints12
XM_026910944.2 mRNA downstream 263395 1004477 ~ 1007050 (-) True LOC113524614
XM_026910937.2 mRNA downstream 332996 925951 ~ 937449 (-) True ppa2
XM_034302862.1 mRNA upstream 441138 1810150 ~ 1820845 (-) True snapc3
XM_026911038.2 mRNA upstream 524574 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_026912185.2 mRNA upstream 578363 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA upstream 578363 1947375 ~ 1964907 (-) True ccdc149b
XM_026912183.2 mRNA upstream 600751 1969763 ~ 1979549 (-) True lgi2b
TU45475 other downstream 954917 314981 ~ 315528 (-) True G38400
TU45455 other downstream 1002646 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 1009294 260769 ~ 261151 (-) False LOC117596825
TU46918 other upstream 502921 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 502921 1871933 ~ 1877225 (-) False G39603
TU46930 other upstream 502921 1871933 ~ 1877225 (-) False G39603
TU46931 other upstream 502921 1871933 ~ 1877583 (-) True G39603
TU46993 other upstream 608314 1977326 ~ 1979531 (-) False lgi2b

Expression Profile