RNA id: TU46910


Basic Information

Item Value
RNA id TU46910
length 1506
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G39596
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1852013 ~ 1853638 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCATTAGAGAGAAAAGGGGCGGGACTAAGTGCCCAGCATTAGAGagaaaaggggcggggctaagTGCCCAGCATTAGAGAGAAAAGGGGTGGGACTAAGAGCCCAGCATCAGAGAGAAGATTGGGCCGGGGCTAGGGCACTTAGTTGTGGGCACTTAGTTGTTGGGCTCTTAGCCCgcccctctctctctaatgTTGGGCACAGCATTGGAGagaaaaggggcggggctaagAGCCCACAATTAGAGTGAAGATGGGGCGGGGCTAAGAGCCCAGCATTAGAgagaaagggggcggggctaagaCTCCAACAGATGTAAAGTACAAACAAATTGTGAGTAAAGAAAAAACTGTCCCGTtagaagaggaaataaaaatttgttacagatttaaagttacagatttacaAGATTCTGAGTTTGTCACTGTGTCTGATTTCTGATATCATATCAACTCCATAAAGcacagaacaaacacaaaacacgtgCATAGTGAACTTTTCTCATCCCTGAGACACATTAAGGCCTGATTAAAAACAGTCACAGTCAGGAGACTTTAAAAGCTTGTCTGGTTTGGGATGATGTCGGGTTTccagaaaagaataaaaaataaatctcgtCCAGTGGCTGAGGCTTTCAGTTAGAGCACTGATTAGTGAAGAGCCTCAGTGTTTGGGATGAAGCCTCATTTACTCCGAGACCTAAACTGGAACAGACTACTGTTTCCTCCAAAACATCCGATTCATGCTGTACATGACTTGATAATGAAGTGAATCAGGAGAATTAAAGGCGCAGTAAGTTTTGGCACCCTCTGCTGTCTGTAAAGTGAACTGCAACtgcaatgattaaaaaaactgacaaacttttctcttctgtctcttcaGACAAAAACTGGTGAAAGCACGTAAGCTTCATCAGGCaccatttaaagaaaaaagccaCAGCTGAGCAGCTCTGATTTTGATTGGGGAtggagctaatttcagggccgGAAAAGCATAAACTTGAAAGCTAGCAGGATGCACTGCATAGCAATATTATGAACCATAGTTTCTCTGAAGTATCTTTcatattatttgattattacaggtctagaaacacttttaaacatcaCACATGGCACCTTTAAAACGAGGGAAAACATTAAACTGCGCAGTGCTGCAGACTTCGAGGGCGGAGTTTTGACTCTTTAGATGTTCCTCAAAGGCGTCAGGATTTCTCGGAGCCTGAACGCAGCTGATCACAGGTCAGTTTTGTCCTCGTAGCGGCAGATACACGCAGCTCTCTGGCTGTCCAGGTAGGGTTTACAGCCCAGGTGCATGACGGCATCGAAGAGCAGAGTCACCGCCGATTCACACGCTGATTCACAGAGAAACAACAGGATGATAAATACAGTAAGTCTTAAGAGAATAATCACATGAGTGACAAATGAAGACCAAGACAATAATGACTTAAAGAAAaggtattaattaatattattaatattcactgTAAGTTCATGGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46903 lncRNA downstream 5651 1844765 ~ 1846362 (-) True G39589
TU46882 lncRNA downstream 27417 1823848 ~ 1824596 (-) True G39570
XR_004577896.1 lncRNA downstream 161019 1686729 ~ 1690994 (-) True LOC117596905
TU46836 lncRNA downstream 172210 1583988 ~ 1679803 (-) True G39533
TU46824 lncRNA downstream 295468 1555728 ~ 1556545 (-) True G39521
TU46925 lncRNA upstream 18295 1871933 ~ 1877225 (-) False G39603
TU46970 lncRNA upstream 85042 1938680 ~ 1941389 (-) True G39624
TU46965 lncRNA upstream 86346 1939984 ~ 1941748 (-) False G39624
TU46966 lncRNA upstream 86346 1939984 ~ 1941748 (-) False G39624
TU46967 lncRNA upstream 86346 1939984 ~ 1941748 (-) False G39624
XM_034302862.1 mRNA downstream 31168 1810150 ~ 1820845 (-) True snapc3
XM_034303177.1 mRNA downstream 483001 1270445 ~ 1369012 (-) True cntln
XM_026910962.2 mRNA downstream 698663 1146129 ~ 1153350 (-) False anp32b
XM_026910961.2 mRNA downstream 698663 1146129 ~ 1153350 (-) True anp32b
XM_034301860.1 mRNA downstream 782198 1065387 ~ 1069815 (-) True ints12
XM_026911038.2 mRNA upstream 39948 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_026912185.2 mRNA upstream 93737 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA upstream 93737 1947375 ~ 1964907 (-) True ccdc149b
XM_026912183.2 mRNA upstream 116125 1969763 ~ 1979549 (-) True lgi2b
XM_034302863.1 mRNA upstream 147811 2001449 ~ 2007253 (-) True aip
TU46700 other downstream 550510 1293044 ~ 1301503 (-) False cntln
TU46693 other downstream 562198 1285808 ~ 1289815 (-) False cntln
TU46718 other downstream 571678 1270541 ~ 1280335 (-) False cntln
TU45475 other downstream 1536485 314981 ~ 315528 (-) True G38400
TU45455 other downstream 1584214 263486 ~ 267799 (-) False LOC117596825
TU46918 other upstream 18295 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 18295 1871933 ~ 1877225 (-) False G39603
TU46930 other upstream 18295 1871933 ~ 1877225 (-) False G39603
TU46931 other upstream 18295 1871933 ~ 1877583 (-) True G39603
TU46993 other upstream 123688 1977326 ~ 1979531 (-) False lgi2b

Expression Profile