RNA id: TU46970


Basic Information

Item Value
RNA id TU46970
length 2636
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G39624
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1938680 ~ 1941748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGTACCAGAACCCGCTCCAGACGCTCTGTTAGAACGTCTCAGCTACTGCTCTAGTACCAGAACCCGCTCTAAACGCTCTGACGAAATATCCAAGCTACTGTTCTAGAACCAACACAGATTGAAACCTATTGTTAGAATGTCTGAGATCCTGTTCTAGAGCCAGAACCCACTCTAAACGTTCTGTTAGAATGTCTCAGCTACTGCTCTAGAACCAGACGCTGCTCTAATCATGCTGTTGAAATATCCGAGCTAATATTTTAGAACCGACACCATTTAAAACGTCCTGTGAAACTAAACACCTCGTTAAAATGTCTATAACCAAGGACTGAAATGTCTAGAACCAACTCTGCTCTAGAACTCTGTTCTGTTCTGGAATCAGAACAATCTGACATCCTGAATGTCTGAGCTGAAGGACCTCTAGCACTAACACCAGCTGTTCTAAACATCCTGTTAGAGGGTCTGAGCTGCGGTTCTAGAGCCAACACCATTTTTAACATCCTGTTTTAAAAGCCGTGTTAAAATGTCCCGGCTATTGTTCTAGAACCGGAAACTACAATGTTGTAAATGTTCTGTTTGAACTACTAATCAAAACTGACTCCTTCCTAAACGTTTAAACTGCTGTTCTAGAACTAGAACAACACTGTTCTCAACATCCTGTTCTAATCTTTAAGCTACTGTTCTAGAATCCTAACGATCCTAACGATCTAACACTCTAAAACGTCCGAGCTGACGTTCTGTCCTATCAGAAGCTCTGAGCTACTTTTCTAAACGCTCTGTTACAATGTCTCAGCTCCGGCTCTAAAGAGACTCTGAAAAAGACTGCTGTTCCAGAACTAGAACCAACACTGTTCTAAATCGACTCTATTCTGTTCTAGAATCGTCACAATCAAACACTTTAAACATCTAAGCTGATGTTCTGCCGTATGTTCTAATCTTTGTGCTACCATTCTAGAACCTGAACTGACTCCATTCTGTTCTAGAATCGTAACGGTCTAACATTCTAAACGTCTGTGCTGATGATGTTCTGTCCTAGCAGAAGGTCTGAGCCAACGCCctagaaccagaaccagaaccgaCTCTAAACATTCTAAACATCCTGTTCAAATCTTTACGCTACTGTTCTAGAACCTGCTCTAGAACCTGCTCTAGAATCGTAAAGATCTAACGCTTTAAATGTCCGAGCTGATGTTCCGTGCTGTCAGAAGATCAGAGCTACTTTTCTAGACTCCGCGCTAATCGTCCCGCTTAGAACCGCGCGCTCAAACGGAACCCGCTGAAATGTATTCGTGTGAAAGCGTTAAGAAATAAGAAGCTGAAGGAGTTCGCACACGTCTGTGCatctttactgtttttttttttttttttaaagagcaaaTTCggtcaagtcttttttttttttttttttggttcagtcAAGATTTCAGAGACAACTCAGAACTCCTACAGAACGAAGGAGAAAGGCGCGCATGAAATGTATGATTAATCAGATTAATACGATCAGATGAGGGTTTcatccttcatcatcatcatcatcatcttcttcttcttcttcccttcCTTCTTTCATGCGTGGCTCTTCTTTTCTCGAAAAGGTCGAGTGTACGCTTTAGAAGGAAATGTGTCGAATACGCTGCAAACTtgacacttaaaaaaaattttttttaaatttctgcgTGAAAACAAAGCCGCTCTGATGATTTGATGAAGACAGACGGCGCAGTGTGTCGCTCGCGAGGAACGAGCGCCACTGAAACGTTCAAATCTGTCGGATAAATAGTAGAAGCTGACCTCAGGGACAACTAGAGAACTTAGTGTtgttctgtgtgtatatatatatatatatataagggcTGGACAATATGATCGTCtgatatcgatattgtgatatatgAACATCACGATACACCTGAGTATCGAGTACAGGGTGTGCAGGTTTATCCTCGATAAAGATTTAGATAATAAAAAAGCACGCGGGACGTACAGATGTTcagaaagatgttttttttttagttaaaaactaaatattgtgatacacgTGATGTATCACGGTGTTCAGAAATATCACGATATTGACAGGATACATTTTCCATTTCGCCCAAATCCTCATAAATTAACATGAGAAGGAGAATAAACcaatcagaataataataataataataataataataataataataataataataataaatttctgTTTCTATGTGCAGAATCGCTGACGGTTCGAGTCTTCCAGCCTAAACTAAAAAATATCTGGTGATTGTGCATGAACAGGAAACGCCTTCATATCTGTACAGCTTTAGTCTGGTTTAAAGAAATCCTCACGTTCTCTCCCTACCTCTGACTCCTCCTACTTTTCCCTAGCGGGCTTTGTGATTGGCCGTCTCAGCAGACGGACAGGGTGGGCGGGCTCTGTCTCTGCtgggtttttttcagcagttgGATGCGGTTGTGGCAGTAGAACTTGATGGCTCTCCAGTCCCTGCGGTTGGTGACCAGGAGCGGACACTGCTCCAGACAGCGCTCGCAGTCCGCTTTAGCGGGGACGCGCAGCTCCATGATGTTCCGCACCAGGTGGGACTCCACCGCCGCCCGCTCCGCCTCGGACCACGGACGCTTCAGGACGCCGCGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46925 lncRNA downstream 61455 1871933 ~ 1877225 (-) False G39603
TU46910 lncRNA downstream 85042 1852013 ~ 1853638 (-) True G39596
TU46903 lncRNA downstream 92318 1844765 ~ 1846362 (-) True G39589
TU46882 lncRNA downstream 114084 1823848 ~ 1824596 (-) True G39570
XR_004577896.1 lncRNA downstream 247686 1686729 ~ 1690994 (-) True LOC117596905
TU46978 lncRNA upstream 20379 1961768 ~ 2012888 (-) True G39627
TU46998 lncRNA upstream 46073 1987462 ~ 1997288 (-) False G39646
TU47000 lncRNA upstream 46073 1987462 ~ 1997288 (-) False G39646
TU47001 lncRNA upstream 46073 1987462 ~ 1988694 (-) False G39646
TU47004 lncRNA upstream 46073 1987462 ~ 1997288 (-) True G39646
XM_026911038.2 mRNA downstream 43581 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_034302862.1 mRNA downstream 117835 1810150 ~ 1820845 (-) True snapc3
XM_034303177.1 mRNA downstream 569668 1270445 ~ 1369012 (-) True cntln
XM_026910962.2 mRNA downstream 785330 1146129 ~ 1153350 (-) False anp32b
XM_026910961.2 mRNA downstream 785330 1146129 ~ 1153350 (-) True anp32b
XM_026912185.2 mRNA upstream 5986 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA upstream 5986 1947375 ~ 1964907 (-) True ccdc149b
XM_026912183.2 mRNA upstream 28374 1969763 ~ 1979549 (-) True lgi2b
XM_034302863.1 mRNA upstream 60060 2001449 ~ 2007253 (-) True aip
XM_026932538.2 mRNA upstream 66520 2007909 ~ 2011692 (-) True sod3b
TU46931 other downstream 61097 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 61455 1871933 ~ 1877225 (-) False G39603
TU46922 other downstream 61455 1871933 ~ 1877225 (-) False G39603
TU46930 other downstream 61455 1871933 ~ 1877225 (-) False G39603
TU46700 other downstream 637177 1293044 ~ 1301503 (-) False cntln
TU46993 other upstream 35937 1977326 ~ 1979531 (-) False lgi2b
TU47094 other upstream 231969 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 1091343 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 1092477 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 1093093 3034482 ~ 3034553 (-) True trnah-gug_3

Expression Profile