Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU46978 |
| length | 252 |
| lncRNA type | read_through |
| GC content | 0.49 |
| exon number | 2 |
| gene id | G39627 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1961768 ~ 2012888 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46965 | lncRNA | downstream | 20020 | 1939984 ~ 1941748 (-) | False | G39624 |
| TU46966 | lncRNA | downstream | 20020 | 1939984 ~ 1941748 (-) | False | G39624 |
| TU46967 | lncRNA | downstream | 20020 | 1939984 ~ 1941748 (-) | False | G39624 |
| TU46968 | lncRNA | downstream | 20020 | 1939984 ~ 1941748 (-) | False | G39624 |
| TU46969 | lncRNA | downstream | 20020 | 1939984 ~ 1941748 (-) | False | G39624 |
| TU47034 | lncRNA | upstream | 32227 | 2045115 ~ 2091336 (-) | True | G39662 |
| TU47045 | lncRNA | upstream | 46866 | 2059754 ~ 2060427 (-) | True | G39672 |
| TU47069 | lncRNA | upstream | 80204 | 2093092 ~ 2093298 (-) | True | G39696 |
| TU47073 | lncRNA | upstream | 96222 | 2109110 ~ 2112854 (-) | True | G39699 |
| TU47072 | lncRNA | upstream | 99654 | 2112542 ~ 2113534 (-) | False | G39699 |
| XM_026911038.2 | mRNA | downstream | 66669 | 1893586 ~ 1895099 (-) | True | si:ch211-113e8.11 |
| XM_034302862.1 | mRNA | downstream | 140923 | 1810150 ~ 1820845 (-) | True | snapc3 |
| XM_034303177.1 | mRNA | downstream | 592756 | 1270445 ~ 1369012 (-) | True | cntln |
| XM_026910962.2 | mRNA | downstream | 808418 | 1146129 ~ 1153350 (-) | False | anp32b |
| XM_026932379.2 | mRNA | upstream | 113930 | 2126818 ~ 2143166 (-) | False | irf2a |
| XM_026932372.2 | mRNA | upstream | 113931 | 2126819 ~ 2143166 (-) | True | irf2a |
| XM_034302849.1 | mRNA | upstream | 207259 | 2220147 ~ 2984079 (-) | True | tenm3 |
| XM_034302850.1 | mRNA | upstream | 207259 | 2220147 ~ 2613941 (-) | False | tenm3 |
| XM_034302851.1 | mRNA | upstream | 207259 | 2220147 ~ 2582381 (-) | False | tenm3 |
| TU46931 | other | downstream | 84185 | 1871933 ~ 1877583 (-) | True | G39603 |
| TU46918 | other | downstream | 84543 | 1871933 ~ 1877225 (-) | False | G39603 |
| TU46922 | other | downstream | 84543 | 1871933 ~ 1877225 (-) | False | G39603 |
| TU46930 | other | downstream | 84543 | 1871933 ~ 1877225 (-) | False | G39603 |
| TU46700 | other | downstream | 660265 | 1293044 ~ 1301503 (-) | False | cntln |
| TU47094 | other | upstream | 160470 | 2173358 ~ 2173751 (-) | True | G39720 |
| trnae-uuc | other | upstream | 1019844 | 3032732 ~ 3032803 (-) | True | trnae-uuc |
| trnah-gug_2 | other | upstream | 1020978 | 3033866 ~ 3033937 (-) | True | trnah-gug_2 |
| trnah-gug_3 | other | upstream | 1021594 | 3034482 ~ 3034553 (-) | True | trnah-gug_3 |
| XR_004577883.1 | other | upstream | 2532696 | 4545584 ~ 4609450 (-) | False | dclk2a |
