RNA id: XM_026912183.2


Basic Information

Item Value
RNA id XM_026912183.2
length 2653
RNA type mRNA
GC content 0.46
exon number 8
gene id lgi2b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1969763 ~ 1979549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagCCAGTCATGCTGAAGTGAGAGTTCCTGCAGTGCTGCATTTCTGTCCGGGActctgaataaaacactcagcttCCACCATGAGCACTGCAGCTCCCATTCCTCCTGTGCGAGTCTGTGTGCTCCTCACTTTATTCCTCTCATGCTGGGTGAATTGCTCAGGAGGAAAGCGTGTGTTTAAATGTCCTTCAGGCTGCACCTGCACCACTGAGACCATCATCTGCGTCGGATCATCCTTCATCCCCCGGACTGTCCCTGCTGACATCAGCTCTCTGAGCATTGTTAATGGCACTTTCCCAGAAATCAGAGAAGCTACATTTGCCCTGATGCCATCCCTGCACTTGCTGCTCCTTAATTCCAACTCCATCTCCTGCATAAAGGATTTACACTTCTCCGCCTTCCTCGCCTGAAAgtacctATTCATCGAGGGGAACAAGATCGAGGAGATAAGCAAACACGCCTTCAGAGGACTTCGAGACGTCACACATCTGTCTTTAGCGAACAACAATATGAAAAGTTTACCCAAAGGCCTGTTCTCTGACCTGCACTCTCTCATAGAGCTAGATTTGAGAGGAAACCAGTTTCAGTGTGACTGCCAGTCCATGTGGCTGATGTTGTGGCTGAAGAAGACGAATGCGACGGTTTCAGATGTTTACTGTGCAGAACCGGAGAAGATGAAGGGCATCCTGCTGAAGGACTTCCCTGAGAAGCACGCCAAGTGTGTCTCCACTGATTTTATTCCTCATCAGACCATAAACACTCAGTCCATGTCAGCGGACATTTTCTCCTACAAAGAAGACGTGTATGTTGCTCTGGCCGTGCCGAACTCGGACAGCTGTCTCATCATGGAGTGGGATCACATCGAAACCCACTTCAGGCCTTTCGATAATATCACAGGGCGGTCCGTGATTGGCTGCAGGTCGGTGTTGATTAACGAGCAGGCGTTCGTGATCGTCGCTCAGCTCTTCGATGGCTCTCGAATCTACAAATTCGACCAGGAGCAGAACCAGTTCACCAAATTCCAAACAGTCGAAATGCTTAACGTGTCCAAGCCGAACGACATCGAGGTGTTCCGACTCGGGGACGAGTGGTTCTTCTTGATCGTGGACAGCTCCAAAGCAGGCATGTCCACCCTGTTCAAGTGGAACAACACCGGCTTCTTCCCGTATCAGTTCCTCCACGAGTGGTTCCGCGACACGGATGCGGAGTTCGTCGACCTGGATGGGAAGTCCGTGCTCATCCTGGCGAGCCGTTCTCAGGTCCCCGTCATCTACCAGTGGAACAAGAGCACCCAGACGTTTGTTCTCTTTGAGGACATACCCAACATGGATGACATGGTGAGCGTGAAGGCCTTCAGGATCGACCGCGTCCTCTATCTGGCTCTGGCCTGCTACATTGGAGACTCGAAGGTCCTCAAGTGGACGGGGAAGCGCTTTGAGGAAGTTCAGGGCTTCCCGTCGCGTGGTGCGATGGTCCTCCAGCCGTTTAGCTTCAGAGATCAGCACTATCTCATCCTGAGCAGCGATTATTCCTTCTCTCAGATCTTTAGATGGGACAAGGAGAAGCAGATCTTCCTCAAATTCAGGGAGGTGTACGTTCAGTGGCCTCGTTCTTTTACTCCGTTATCGACGGGTCAGCGTGATTTTCTCCTCGCCACCAGTTTTAAGGGGAAAACGAAGGTTTTTGAACACGTCTCAGTCGATTACAGCTGATGAGACTAAGAGCGCTGTGGTCTTACTTAGAGCTGGGCGATAATCAAGTTTTACTGATAccaacatttcatttgtttcattgacgttattattatttttctaaattcaGCATTGTTGATTGTTTCACTGCACCACTGCTAACATTTAACTTTCTTTGAGCACAGGTTTAAtcctgctctcagccaatcagggcACACCTTGGGGCAGAAATGATTGTGATTGGACGTGAAGTGacttcagttaaataaatatacactgtGAGTCTGGTTTAGCGCCAGTTTTAGAAGTAAACTACGGCTGACTGAGCCGTCTGTTGCTGTTTAAAGAATAGTTTACATCATTtgttatgtaatgtttaatataatatagtttatttttatgtgaaaagaaatttttaataatattcctTTACAGTTACAGTCCTCTAGGTTAAACTATAATACGTGAACCAACTTGAGGTGTGTGTGCGGGACTCGTTTTTAAATCCTATTCCCACAGAAGGTTTGGCCAATCCCATCTGCCCACAGTATTTTCTAGCATACTGAGTTGTTTTATTTCTACAGAGCTGCTGAGGTGACTAGTGATACCAAGATACCAAAGTCGTGGCCACAAATTGTTTAACTTGAGTCCATTTAAGACCCAATGACTTTACTGGAGTGGCTGTCTACAGTGGAGCAAAACAAATCCACATCCATTAAAAAGGCTATAATGTGGCGTCTCTTCCACAATCTGTGTATGGCCTGAGTAAACACGATCCCCATCACACATAGAAGGCACACAGCTATGCAATCTAGCAAGCTGTAAAAAAGTCATACCTCTTACCCAAGTACGCTAGTGGTAGAGATTCAACATCACTAGCTAGCCATGGCTAATAACAATCTGAGGAAATCCAGTGTTATGCCTCCCAATAATGAATAtgattaatgtaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46965 lncRNA downstream 28015 1939984 ~ 1941748 (-) False G39624
TU46998 lncRNA upstream 7913 1987462 ~ 1997288 (-) False G39646
TU47000 lncRNA upstream 7913 1987462 ~ 1997288 (-) False G39646
TU47001 lncRNA upstream 7913 1987462 ~ 1988694 (-) False G39646
TU47004 lncRNA upstream 7913 1987462 ~ 1997288 (-) True G39646
TU47008 lncRNA upstream 18950 1998499 ~ 2000262 (-) True LOC117596860
XM_026912185.2 mRNA downstream 4856 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA downstream 4856 1947375 ~ 1964907 (-) True ccdc149b
XM_026911038.2 mRNA downstream 74664 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_034302862.1 mRNA downstream 148918 1810150 ~ 1820845 (-) True snapc3
XM_034303177.1 mRNA downstream 600751 1270445 ~ 1369012 (-) True cntln
XM_034302863.1 mRNA upstream 21900 2001449 ~ 2007253 (-) True aip
XM_026932538.2 mRNA upstream 28360 2007909 ~ 2011692 (-) True sod3b
XM_026932379.2 mRNA upstream 147269 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 147270 2126819 ~ 2143166 (-) True irf2a
XM_034302849.1 mRNA upstream 240598 2220147 ~ 2984079 (-) True tenm3
TU46931 other downstream 92180 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 92538 1871933 ~ 1877225 (-) False G39603
TU46922 other downstream 92538 1871933 ~ 1877225 (-) False G39603
TU46930 other downstream 92538 1871933 ~ 1877225 (-) False G39603
TU46700 other downstream 668260 1293044 ~ 1301503 (-) False cntln
TU47094 other upstream 193809 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 1053183 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 1054317 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 1054933 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2566035 4545584 ~ 4609450 (-) False dclk2a

Expression Profile