RNA id: TU47000


Basic Information

Item Value
RNA id TU47000
length 1403
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G39646
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1987462 ~ 1997288 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGAAACAAACGTTTTTGAAGTTTAATTGAAAAACCGGATTTTTATTGgagtttttttgcatttaaatacagaactgcaaaaagtttgaaatTACAAAAGTAATTATGTGGAACAGaggtgtgtaaaagtgtgtgagagagagaataagagagagagagagatatacagagaggtgtgggtgtgtgttatgtgCGAGCGCTGCGCTCGGTTTCAGCTAGACACTCTCTCACTAGAGCTCGGGCGTGGATGATTCCTGAAACGCAAACAAAAAGAGAGGCATTACacactttcttctctctctctgtcgtaTGAttgagggtgccaatatttttgggTTGCATTTCTGGTCCTGAAATGAAGTCTGTCTGAGTCGGAACGTAGGATAACGAGGACACATCACATAAAGTTAATCCTATAATTCTGCTCACCTGACAACAGTGAACATAAAGCGTATCCTGTGCTACGCTTTACTACACTACAGCGCACTATACTATATTTACACGTACTACAGTATACCGCGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCGCTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCTACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTACAGTATACTGTGCCACGCTTTACTACGCTACAGCGCACTATACCGCGCTACACTATATTTACACGTACTatagctggtgagggaatgactgtttacagctgctataacataagtgagaacaggaagtaacatgtTTAAGTGTAAGTCTAAACGGATAAAAATCTATGACGTGTCGTTCTTAAATAGATGAAAATGATTGGTAATTGTTGGTaggtggtataagaggaataaagcacttgcggatgtgttgttataggacgTAACTCCGCTTCTTTACACCAATCCGTCACTCAGGGTTTTACGATAAGAGCAtgacaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgttactgtagtacCTCTCTTCAGTCTCTCCATGGCGCTTTTACTGCCGGCGTACGTGGGTCTGATTTCTCGACTCATCTCCTCTATCACAGACAGCAGCTCGCTGTAGGTGGAGCCCTGAGACACTTTCACTGGCTGAGAttcaaaaacaacaataaaataaaattcagaaaaGTTTTCCATTAAATTTCAGCTGCTTAATAAAActctaaaatttatttttagagaCTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46965 lncRNA downstream 45714 1939984 ~ 1941748 (-) False G39624
TU47008 lncRNA upstream 1211 1998499 ~ 2000262 (-) True LOC117596860
XR_004577845.1 lncRNA upstream 1606 1998894 ~ 2000261 (-) False LOC117596860
TU47007 lncRNA upstream 1614 1998902 ~ 2000262 (-) False LOC117596860
TU47034 lncRNA upstream 47827 2045115 ~ 2091336 (-) True G39662
TU47045 lncRNA upstream 62466 2059754 ~ 2060427 (-) True G39672
XM_026912183.2 mRNA downstream 7913 1969763 ~ 1979549 (-) True lgi2b
XM_026912185.2 mRNA downstream 22555 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA downstream 22555 1947375 ~ 1964907 (-) True ccdc149b
XM_026911038.2 mRNA downstream 92363 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_034302862.1 mRNA downstream 166617 1810150 ~ 1820845 (-) True snapc3
XM_034302863.1 mRNA upstream 4161 2001449 ~ 2007253 (-) True aip
XM_026932538.2 mRNA upstream 10621 2007909 ~ 2011692 (-) True sod3b
XM_026932379.2 mRNA upstream 129530 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 129531 2126819 ~ 2143166 (-) True irf2a
XM_034302849.1 mRNA upstream 222859 2220147 ~ 2984079 (-) True tenm3
TU46993 other downstream 7931 1977326 ~ 1979531 (-) False lgi2b
TU46931 other downstream 109879 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 110237 1871933 ~ 1877225 (-) False G39603
TU47094 other upstream 176070 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 1035444 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 1036578 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 1037194 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2548296 4545584 ~ 4609450 (-) False dclk2a

Expression Profile