RNA id: TU47008


Basic Information

Item Value
RNA id TU47008
length 1621
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC117596860
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1998499 ~ 2000262 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTCAGAAGGTGCTGGTGCTGGACCCTTCTCTGGGGCCGGCCGTGGCCAGAGAGATCCGAGCGATGGAGGAGCGCCTccgagagaaagacaaagaggagAAAGGACGCTACAAAAAACTCTTCACCTCCAGCGGCAGTTCAGCAGCAGCTACTACGAGCTGAAACCGGCGTGGACGTTTTCTTTAGTCGCTCCTGAAGAGATGCTCCATTACAGAGAAGCTGGAACACCTGAGCACATTGTGAACTCTTCGCCATTTCAACACGAGCAGCTTCCTTGTCTTatttccctcacacacacacacacacacacacacaccccaatcCTCATTAACACcctcacaccattacaccacacaaataaataaataaataaatctctgcaGTGTAACtagggctgtgtcccaaatgctaAAGTTCTTACAAGGCAGCATGATGAAGGACACCGTGTTACACCACGTTGGGGACATTAGATGTGACCTCTAGCGTTTAGGACACACCCTAGACGTGAGGTGAGGTGCTAATTCGAAGGAGCTCACCTTTAATTTTGCACAAAATTTACAGGCTCGATGCGTCAGACCCTGGTGAAATTAAGGGACCTGGAAATGGGACACGCCCCCAAGAGAGAGACAATCAGATATAAAGTCCTCTAGCGCCTTGTCATTCTTTCTGTAGTAATCCTGTCTATCTTTCATGTTAGCTTCTCTCTGTAATTATTATTGTCTTTAAAATGTACGTGTGTATCGtttcttttaaatgtgtaaacCATCACACGTGAATTTACGCAGAAATGGTcgcaattaaataaataacgtgGACGATATACTCGTATATCGATGTCGCTACTGTCGTCTATCCCGCAGATTATCTTAAAcgttttcagaaatatttttgtcaaCATGGAatcattaccaaaaaaaataaatcactcgTAAAAGCATTTATAATTGTTACActacacttcctgtttttttttttttaaatcgttcAAACTTCTTAGCGAAGATAAATATCATGAAACGTGACGTGTTTTGTTGTGAAAATGTTACGTAGGAAACTATAAGGTTGCGATGATTTTTCTCACCCCGACTCATGGAATTAACCAGAGACCATCTGCATTTACTCCAtctgaatgtgtttttgtttacgCCTTATATGTCACTGTAAAAGACAACGCTGCATTTATGTTATAACAaaagccaaataaaaaaaaactaaggaAAGTAAACGTATTATCTATAGATGTGTTGTTCACAGACGAGTCGGATCATGATGAGACTCTACTCACATTTACAGTTCTCTCTGAAACTATTGGAACAAACAGCAAgactaattatttttattcatgctttacactgaagacatttgggtttgagatcagaagatgaatatgagacgatagatcagtatttcagcttttatttcctgacatttacatctagaACTGAGGACATGGCACCTTCGGTGGCAGGCCacacaatttttaggtgagcaaaagtattggaacagctagtcttaaagtaaataacacttaatatttggttgcgtATCTCttacttgcaataactgcatcaagccggtgacccgctgacatcaccaaactgtttcattcttcttttgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46998 lncRNA downstream 1211 1987462 ~ 1997288 (-) False G39646
TU47000 lncRNA downstream 1211 1987462 ~ 1997288 (-) False G39646
TU47004 lncRNA downstream 1211 1987462 ~ 1997288 (-) True G39646
TU47001 lncRNA downstream 9805 1987462 ~ 1988694 (-) False G39646
TU46965 lncRNA downstream 56751 1939984 ~ 1941748 (-) False G39624
TU47034 lncRNA upstream 44853 2045115 ~ 2091336 (-) True G39662
TU47045 lncRNA upstream 59492 2059754 ~ 2060427 (-) True G39672
TU47069 lncRNA upstream 92830 2093092 ~ 2093298 (-) True G39696
TU47073 lncRNA upstream 108848 2109110 ~ 2112854 (-) True G39699
TU47072 lncRNA upstream 112280 2112542 ~ 2113534 (-) False G39699
XM_026912183.2 mRNA downstream 18950 1969763 ~ 1979549 (-) True lgi2b
XM_026912185.2 mRNA downstream 33592 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA downstream 33592 1947375 ~ 1964907 (-) True ccdc149b
XM_026911038.2 mRNA downstream 103400 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_034302862.1 mRNA downstream 177654 1810150 ~ 1820845 (-) True snapc3
XM_034302863.1 mRNA upstream 1187 2001449 ~ 2007253 (-) True aip
XM_026932538.2 mRNA upstream 7647 2007909 ~ 2011692 (-) True sod3b
XM_026932379.2 mRNA upstream 126556 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 126557 2126819 ~ 2143166 (-) True irf2a
XM_034302849.1 mRNA upstream 219885 2220147 ~ 2984079 (-) True tenm3
TU46993 other downstream 18968 1977326 ~ 1979531 (-) False lgi2b
TU46931 other downstream 120916 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 121274 1871933 ~ 1877225 (-) False G39603
TU47094 other upstream 173096 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 1032470 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 1033604 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 1034220 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2545322 4545584 ~ 4609450 (-) False dclk2a

Expression Profile