RNA id: TU47034


Basic Information

Item Value
RNA id TU47034
length 749
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G39662
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2045115 ~ 2091336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGATAGAAACTTTAATGAAACAGGTAAATTCGTTAAGTGATGTACAGTCACACACGTTACACACTTTGCCTCGTCTGGGATTtcaactgaaaaaagaaaaaaaaaaagtcaacagtcctcatgttttttctttaaacccTAAATGAATCCTTTAATTTCAGAAtaagtttgttttcttttatagtAAGTCAATCTAagtactatttatttatttttttaataagcaatATGAAAAGTATGACTCCAGTTCTTATTACTTTATCAACAGAGCTAACGCCGTCATGAAGAATGACTTTATTTCTCTGGTTTTTTATCATACAACATTATGAATCGTGAAATTTAATGTTGAGATCTCATACCGGCTTTCTTCCCTGTGACGATTTTTGATCTCTTTAAAACTGTCGGGATCCTCATGTCAGAGTGCAATCCATCagcaggatgaaaaaaaaaaaaacaacaattattactgaaaaaaaaaaacatgagcagATACTTCGAGACTATCCCGGGTTATGAAAATAACTGGAGAATTTCCTGATTGAGATAAATCatgattcatttccattttgactatttttttctccttcttttattttttttttcttcttttttgcagTGATTTGTTGCGATGCTGTAGAACAGTCAGTGGAAGCCATACCTGTTGGGTTTAACAGTCCCCGTGGAGGTTTGAGGTGCTTGTCACGGCCcgagtgtttgtttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46978 lncRNA downstream 32227 1961768 ~ 2012888 (-) True G39627
TU47008 lncRNA downstream 44853 1998499 ~ 2000262 (-) True LOC117596860
TU47007 lncRNA downstream 44853 1998902 ~ 2000262 (-) False LOC117596860
XR_004577845.1 lncRNA downstream 44854 1998894 ~ 2000261 (-) False LOC117596860
TU46998 lncRNA downstream 47827 1987462 ~ 1997288 (-) False G39646
TU47069 lncRNA upstream 1756 2093092 ~ 2093298 (-) True G39696
TU47073 lncRNA upstream 17774 2109110 ~ 2112854 (-) True G39699
TU47072 lncRNA upstream 21206 2112542 ~ 2113534 (-) False G39699
TU47079 lncRNA upstream 32639 2123975 ~ 2126647 (-) True G39705
TU47081 lncRNA upstream 46111 2137447 ~ 2139849 (-) True G39707
XM_026932538.2 mRNA downstream 33423 2007909 ~ 2011692 (-) True sod3b
XM_034302863.1 mRNA downstream 37862 2001449 ~ 2007253 (-) True aip
XM_026912183.2 mRNA downstream 65566 1969763 ~ 1979549 (-) True lgi2b
XM_026912185.2 mRNA downstream 80208 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA downstream 80208 1947375 ~ 1964907 (-) True ccdc149b
XM_026932379.2 mRNA upstream 35482 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 35483 2126819 ~ 2143166 (-) True irf2a
XM_034302849.1 mRNA upstream 128811 2220147 ~ 2984079 (-) True tenm3
XM_034302850.1 mRNA upstream 128811 2220147 ~ 2613941 (-) False tenm3
XM_034302851.1 mRNA upstream 128811 2220147 ~ 2582381 (-) False tenm3
TU46993 other downstream 65584 1977326 ~ 1979531 (-) False lgi2b
TU46931 other downstream 167532 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 167890 1871933 ~ 1877225 (-) False G39603
TU47094 other upstream 82022 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 941396 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 942530 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 943146 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2454248 4545584 ~ 4609450 (-) False dclk2a

Expression Profile