Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU47045 |
| length | 267 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G39672 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 2059754 ~ 2060427 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46978 | lncRNA | downstream | 46866 | 1961768 ~ 2012888 (-) | True | G39627 |
| TU47008 | lncRNA | downstream | 59492 | 1998499 ~ 2000262 (-) | True | LOC117596860 |
| TU47007 | lncRNA | downstream | 59492 | 1998902 ~ 2000262 (-) | False | LOC117596860 |
| XR_004577845.1 | lncRNA | downstream | 59493 | 1998894 ~ 2000261 (-) | False | LOC117596860 |
| TU46998 | lncRNA | downstream | 62466 | 1987462 ~ 1997288 (-) | False | G39646 |
| TU47069 | lncRNA | upstream | 32665 | 2093092 ~ 2093298 (-) | True | G39696 |
| TU47073 | lncRNA | upstream | 48683 | 2109110 ~ 2112854 (-) | True | G39699 |
| TU47072 | lncRNA | upstream | 52115 | 2112542 ~ 2113534 (-) | False | G39699 |
| TU47079 | lncRNA | upstream | 63548 | 2123975 ~ 2126647 (-) | True | G39705 |
| TU47081 | lncRNA | upstream | 77020 | 2137447 ~ 2139849 (-) | True | G39707 |
| XM_026932538.2 | mRNA | downstream | 48062 | 2007909 ~ 2011692 (-) | True | sod3b |
| XM_034302863.1 | mRNA | downstream | 52501 | 2001449 ~ 2007253 (-) | True | aip |
| XM_026912183.2 | mRNA | downstream | 80205 | 1969763 ~ 1979549 (-) | True | lgi2b |
| XM_026912185.2 | mRNA | downstream | 94847 | 1947375 ~ 1964907 (-) | False | ccdc149b |
| XM_026932379.2 | mRNA | upstream | 66391 | 2126818 ~ 2143166 (-) | False | irf2a |
| XM_026932372.2 | mRNA | upstream | 66392 | 2126819 ~ 2143166 (-) | True | irf2a |
| XM_034302849.1 | mRNA | upstream | 159720 | 2220147 ~ 2984079 (-) | True | tenm3 |
| XM_034302850.1 | mRNA | upstream | 159720 | 2220147 ~ 2613941 (-) | False | tenm3 |
| XM_034302851.1 | mRNA | upstream | 159720 | 2220147 ~ 2582381 (-) | False | tenm3 |
| TU46993 | other | downstream | 80223 | 1977326 ~ 1979531 (-) | False | lgi2b |
| TU46931 | other | downstream | 182171 | 1871933 ~ 1877583 (-) | True | G39603 |
| TU46918 | other | downstream | 182529 | 1871933 ~ 1877225 (-) | False | G39603 |
| TU47094 | other | upstream | 112931 | 2173358 ~ 2173751 (-) | True | G39720 |
| trnae-uuc | other | upstream | 972305 | 3032732 ~ 3032803 (-) | True | trnae-uuc |
| trnah-gug_2 | other | upstream | 973439 | 3033866 ~ 3033937 (-) | True | trnah-gug_2 |
| trnah-gug_3 | other | upstream | 974055 | 3034482 ~ 3034553 (-) | True | trnah-gug_3 |
| XR_004577883.1 | other | upstream | 2485157 | 4545584 ~ 4609450 (-) | False | dclk2a |
