RNA id: TU47073


Basic Information

Item Value
RNA id TU47073
length 498
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G39699
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2109110 ~ 2113534 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagtatgaaatgaaataaaagaaatgaaataaaatataaataaaagcagtgaGTGAATCCTCGCCTGGTATTTGAGGTTGCTGTGATCCATCGCTCCGGTGGAGGAGGGAAGACTCTGTGGTTTGGAGAAAGTCAGGGGGCCGAACGTCATCTCTCcatcccgctctctctctctatccttccATCCGTCCAAATCCTCCTCTGGCCCCGCCCcttcctcctccccctccaaTGAGAAGGCATCGTCGATGGTGAACGGCTTCGCCATGGTTACGGACCCTCAGGCGCTCAtgtcgttgttgttgtttttttgtgcgTTAGTGTGCGGAGATTCACATTTACGCCATGATGTTACCTAGGTAACCGTGCGTGGAGAAAACATAAATTCgtttcaaaatattaaaattcgCGCATTCACACGAACAAAAACTTTGCACGGAACTTTTTCCTAGTTTAGCTAGATACCTAgcgtctttctttttctgttagCCGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47069 lncRNA downstream 15812 2093092 ~ 2093298 (-) True G39696
TU47034 lncRNA downstream 17774 2045115 ~ 2091336 (-) True G39662
TU47045 lncRNA downstream 48683 2059754 ~ 2060427 (-) True G39672
TU47008 lncRNA downstream 108848 1998499 ~ 2000262 (-) True LOC117596860
TU47007 lncRNA downstream 108848 1998902 ~ 2000262 (-) False LOC117596860
TU47079 lncRNA upstream 11121 2123975 ~ 2126647 (-) True G39705
TU47081 lncRNA upstream 24593 2137447 ~ 2139849 (-) True G39707
TU47156 lncRNA upstream 364838 2477692 ~ 2478424 (-) True G39774
TU47108 lncRNA upstream 520848 2633702 ~ 2984203 (-) False tenm3
TU47237 lncRNA upstream 612451 2725305 ~ 2727474 (-) True G39854
XM_026932538.2 mRNA downstream 97418 2007909 ~ 2011692 (-) True sod3b
XM_034302863.1 mRNA downstream 101857 2001449 ~ 2007253 (-) True aip
XM_026912183.2 mRNA downstream 129561 1969763 ~ 1979549 (-) True lgi2b
XM_026912185.2 mRNA downstream 144203 1947375 ~ 1964907 (-) False ccdc149b
XM_026932379.2 mRNA upstream 13964 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 13965 2126819 ~ 2143166 (-) True irf2a
XM_034302849.1 mRNA upstream 107293 2220147 ~ 2984079 (-) True tenm3
XM_034302850.1 mRNA upstream 107293 2220147 ~ 2613941 (-) False tenm3
XM_034302851.1 mRNA upstream 107293 2220147 ~ 2582381 (-) False tenm3
TU46993 other downstream 129579 1977326 ~ 1979531 (-) False lgi2b
TU46931 other downstream 231527 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 231885 1871933 ~ 1877225 (-) False G39603
TU47094 other upstream 60504 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 919878 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 921012 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 921628 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2432730 4545584 ~ 4609450 (-) False dclk2a

Expression Profile