RNA id: TU47079


Basic Information

Item Value
RNA id TU47079
length 2673
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G39705
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2123975 ~ 2126647 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCACGGTTCATTGCACTCAAAGTAAAGTATTAATTACAGGATCACAGATCTTACTTTATGGCACAAGACTTCATCAAAACTAGCTTCTTTCATTGTAGCAGttagggatgcatcgataccgACGCTGGTATCAGGTTTCGGTCCGATACTGTGCTGAATTACTCGTAATCCGGTACGAATGTCCATTACGAGGGGGTCGTACGGTGTGACGTCATCCTTCTGTAAGTTGTTGCGCTGACGAACAGACGACAGGAAATTGTGCAAGCTGTGCTGTTTGAAAATATCAAGATGAGGAACTAAGGCATCTccctacaatacaagtaacctgataaaacatcttatggCCTTTAAAATACAGCATCCTGAGCTCATGTTTAATGACCGTGCGAGCTGATACTGCTCCGCATGCGCTCTATTAAAACTACTCTctaaacatcttaaacatgAAAAGCACAAGGAGTTCATCGCTAGCGGCACACGGCAGCAGCCAgcatacacacagctgaatAAAATGTTCCCTTGATTGATCAATACTAAGTAGTTTACTCATTCTGCTATCGGTATCGACGAGTACAAAAGAAAATGtactctggaaaaaaaacaaaaataacaacaggTATCGATGCATCCTTAATAACAAAGTTGTGTTCGCATTTCTCAGGTAGTGGTAATGCTAATCATACGAAAGCAGAGATTGTAGAATCATAGAAAAGTGGTATAACAGCTAAAcgcatgctaatgctaataggTGGCCTGGTGTAAAGCAAAGCAGACGGCTTTCACTTTAAACCCAGTGGAGAAAGGACAGactggatttaaacccaaactaATGATGATACAATAAAACCAGGAGTCTGAGAGAGATGGAGTAGATTACGCTACACACATCTGCGTAACTGGTTCACTTCTGGATCAAAGTGAACGCTTGGGAAAGGATGtgtgacgtgacgtgacgtgacgtaACGATCGTTGAATCGTCTGTAGACGATATTACACTGCCATGATATCCAGTGATGTCGCTCTGATTACGCtgtattattttaccaaaaacGCTTTTTTGCGTAGGAGCTCATCAGTTTAACATCAGCGTTGTGTTAATGAGTTCTCACGCAAAAATACACCAAGTCTGTTTCTCCACAATGAAACAGGACACGAGCAAATCGACGTGTGAGTCCGGAACGATTCGCTCAGGTGTTTTCAACTGGCTGAGATACCACctgtaagccccgcccactcccCTCCATCACACACGCTCTCGCCTGCACTCGCGGCGCGCTCTCGCTTTCTGCAAAAGtttaaatcagaataatttgagttcattaatgtgaaataaaatctaacagTGTACTGTATGTTCGACTTAGCTATCATTAGACATGTATAATTAGCatcagttaaatatatttactacAGAAGCCACTGAGAAATTTCACccaaaattgatttaaaaaaagaaaaaaaagacactttcagtgttttttcctaaaaaagattacacagattaaaaaagattGTCAgatttaacactttacaaataatattaatggTAATGATGaatagaaagtgattaaataacactgtttctactctccttaaacctgaaatggtgtaAATGCTagttttccctttttcttttgctcattttctcCGCACATGTGAACACTGAGACACGATTTCAGATTCCTCAGACGGATCCAGTGGATCACGCATGAGATCCAACATGTCTTCAGTTCCCCAATCACAGCTTTACTTCCTACCTGTAGGGGTGGGTGATGTGACAAAAtgatcatatcacgatacttttTACAAGATATTTTTATGATACGTGATATATACAGGTTTGCTGACGTTCAGCAATACAGTAgagctgcattaaaaaaaaaaaaaaaactatgaaaagTTTTTATATCTACAAATTACTCTAAACtgaaacaaaattttaacatcaacgCAGCTGCGTTACAGAGTTTGtaattgctatttttaaaaaaaaaaacgttagtAAAAGATACatgcaatatctcagaaaagtgtgttgTGAGAATCTGTGTTTTAGTAGTTAGCTTTCGAAGCTGTATATAGCAACGACAGTTTCTcatcagaacaaaaaaaaacacctatgAGTGAGAACAGTAGCCGTCGCTACGCGCCCACATCCTGTAGACAAACTAGACTTGTCATCTGCTAGCGTGAATGTGATCAGGTCTGGGCgattattatttatcatgatttttttacatGGTTAACAGTGAAGCCTAGCTTGTGAGATGAGAAATGCTTTGCACCGGGTCGCCTTTTCATTCCTACAGTTGCATTAAGACAATAGAAATGCTTATTACTTTATAGAGGTTTCATTTCTAAACACTTGGTGAAGCAGAAGTATCACTGTGATCGCTGTAGTTCTGGAGTTCTCATGTAATACACAGTTTGGTGTTTTTCCTGCACACGCACTCTTGCTGTTAGCGTGAATCCGTGTGTTAGCGCCGAGAAACACTAAACTGTAACGCGGAAATGTTAAGCAGTCAAGGTTTTGAAGCCTTCAGTGATTTTGACATATACATGATTTTTAGATTTGTATATTAGGGTTTATAACTGAGGggtattttagatatttttaagaTGAATTTTGCGTGAATGAttcataaacaaaaatgaaaaaaaaaataaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47072 lncRNA downstream 10441 2112542 ~ 2113534 (-) False G39699
TU47073 lncRNA downstream 11121 2109110 ~ 2112854 (-) True G39699
TU47069 lncRNA downstream 30677 2093092 ~ 2093298 (-) True G39696
TU47034 lncRNA downstream 32639 2045115 ~ 2091336 (-) True G39662
TU47045 lncRNA downstream 63548 2059754 ~ 2060427 (-) True G39672
TU47081 lncRNA upstream 10800 2137447 ~ 2139849 (-) True G39707
TU47156 lncRNA upstream 351045 2477692 ~ 2478424 (-) True G39774
TU47108 lncRNA upstream 507055 2633702 ~ 2984203 (-) False tenm3
TU47237 lncRNA upstream 598658 2725305 ~ 2727474 (-) True G39854
TU47681 lncRNA upstream 1367018 3493665 ~ 3583108 (-) False G40250
XM_026932538.2 mRNA downstream 112283 2007909 ~ 2011692 (-) True sod3b
XM_034302863.1 mRNA downstream 116722 2001449 ~ 2007253 (-) True aip
XM_026912183.2 mRNA downstream 144426 1969763 ~ 1979549 (-) True lgi2b
XM_026912185.2 mRNA downstream 159068 1947375 ~ 1964907 (-) False ccdc149b
XM_026932379.2 mRNA upstream 171 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 172 2126819 ~ 2143166 (-) True irf2a
XM_034302849.1 mRNA upstream 93500 2220147 ~ 2984079 (-) True tenm3
XM_034302850.1 mRNA upstream 93500 2220147 ~ 2613941 (-) False tenm3
XM_034302851.1 mRNA upstream 93500 2220147 ~ 2582381 (-) False tenm3
TU46993 other downstream 144444 1977326 ~ 1979531 (-) False lgi2b
TU46931 other downstream 246392 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 246750 1871933 ~ 1877225 (-) False G39603
TU47094 other upstream 46711 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 906085 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 907219 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 907835 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2418937 4545584 ~ 4609450 (-) False dclk2a

Expression Profile