Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577906.1 |
| length | 502 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC117596918 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 3515101 ~ 3525121 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577844.1 | lncRNA | upstream | 111995 | 3400795 ~ 3403106 (+) | True | LOC117596855 |
| TU46198 | lncRNA | upstream | 1084014 | 2427812 ~ 2431087 (+) | True | G38962 |
| TU46183 | lncRNA | upstream | 1088501 | 2411201 ~ 2426600 (+) | True | G38948 |
| TU46126 | lncRNA | upstream | 1202650 | 2311651 ~ 2312451 (+) | True | G38895 |
| TU46052 | lncRNA | upstream | 1349616 | 2165170 ~ 2165485 (+) | True | G38826 |
| TU47719 | lncRNA | downstream | 158222 | 3683343 ~ 3685205 (+) | True | G40287 |
| TU47821 | lncRNA | downstream | 339575 | 3864696 ~ 3865000 (+) | True | G40374 |
| TU48045 | lncRNA | downstream | 604994 | 4130115 ~ 4130322 (+) | True | G40586 |
| TU48049 | lncRNA | downstream | 702072 | 4227193 ~ 4227431 (+) | True | G40590 |
| TU48050 | lncRNA | downstream | 703061 | 4228182 ~ 4228548 (+) | True | G40591 |
| XM_026939299.2 | mRNA | upstream | 11981 | 3434345 ~ 3503120 (+) | False | gpm6ab |
| XM_026939308.2 | mRNA | upstream | 11981 | 3434962 ~ 3503120 (+) | False | gpm6ab |
| XM_026939291.2 | mRNA | upstream | 11981 | 3457528 ~ 3503120 (+) | True | gpm6ab |
| XM_026938936.2 | mRNA | upstream | 138985 | 3373213 ~ 3376116 (+) | True | LOC113541773 |
| XM_034302843.1 | mRNA | upstream | 156126 | 3356422 ~ 3358975 (+) | True | LOC117596854 |
| XM_026944828.2 | mRNA | downstream | 47306 | 3572427 ~ 3641748 (+) | True | glra3 |
| XM_026944834.2 | mRNA | downstream | 50351 | 3575472 ~ 3641748 (+) | False | glra3 |
| XM_034303132.1 | mRNA | downstream | 79279 | 3604400 ~ 3641748 (+) | False | glra3 |
| XM_034302975.1 | mRNA | downstream | 119357 | 3644478 ~ 3668492 (+) | True | hpgd |
| XM_026944703.2 | mRNA | downstream | 175458 | 3700579 ~ 3712836 (+) | True | fbxo8 |
| XR_004577910.1 | other | upstream | 1349317 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 1423795 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU45995 | other | upstream | 1423880 | 2085465 ~ 2091221 (+) | False | stox2a |
| TU45994 | other | upstream | 1424260 | 2085465 ~ 2090841 (+) | False | stox2a |
| TU45964 | other | upstream | 1517849 | 1983657 ~ 1997252 (+) | False | cdk2ap2 |
| TU47789 | other | downstream | 306828 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_003404319.2 | other | downstream | 1738461 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 1793413 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 3678829 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 4124077 | 7649198 ~ 7666033 (+) | False | naa15b |
