RNA id: TU47681


Basic Information

Item Value
RNA id TU47681
length 2418
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G40250
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3493665 ~ 3583108 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaataataataataataataataataataataataataataataataataataataaagatgatgAATATTCTCTCTGGACGTCTTTGCAGCTCACATGGTGACTTTCTAGTTTACTTGGAAAAGTGCGCACTTTACAGCTTTACGAACAGCCTGAGACGAAGCACCAGTGTCAAATAACATCATGATACACTTAACGTACGATAAAAAGCTACACTCGAGCgataaaaagtaattttaagGTCTTTCTGGCTCTTGCAATCTTTAGAGAATGTGCTGGAAAATAATCTGTACAATTCGCCAATCAGAAAGGTGACCATCTTAATGAAAAGACGTTTTTCCcgccattttgtttctttaatccAGAATCTTTCCGTTTTTAGAGCAAATACGCACTTTatagcttttaaaaatgtttaagatgAAGCACCAGTGTCACAGCTTCTTCATATTCTTAGCGTACGTTTCTGAGACTTAGCCTAAGATACAAATTGTTTTTtgtaaaaagtcattttaaagttttttcgGTTCTCAAAACCGACAGAGAATTTGCTGGAAAAGAATCTGTGAAATCATACAAGTTTGGTCACGTTTTAGCTTTggatgttaaaaaataataataaacaacaacacgAGGCCCAGTTTAAGTTCTATGAAGTATGTCAACGTGAGTAAAGCAATACTTAAATAAGGTTAATGTCATAAAAAATATCAGAGTTTATTTACGTAAACTGCTTTTCAGGATTAAAAGGATTGTGATTATGTCCAGGAGTCGTATTGCTAAACTAGCCGTAGTGCTAGCTATGCTAGTCCTCTGAAAAACCTAAACAGCACACAAATCTGATATTTAGCGCTTacgtgttttatttataaaacccTTTCTGAGAAATATTGAGCAGTTTATTGCGAAAAGACAAGAAATTAGCACCGTTAAAGTCAAATTAACAGCGCTAACATAACAGTAGGTAGCTAGATGCTAGCAttattagccagctagctttctgtatctctttatcacatttttttccagtaaCGTTAAGGTTTTCATACTGaggttaaaaatgttaaacatgtaTTATTTATACACGGAGAAGTATAAGTAATAGTGTAGCTAGCAATGCGGCTAATTTTCCTATCTTGTCAGACATGACATATCATAATCCTCTTTCCTCTGAAAACAGGTCTGGATAATTAAAAGCTCcacaagtataaaaaaaaaaagtagtttgaCATGTTGGCATGTGATATCCGTGTCTTTAAAGACAAATGGCTCTTATTCGTCAAAGTTGCGTATGGTCAAAACAGATCATTACAAAAAAGCTTACGCAAAATTCccacactttattatttatcaaattTCATCTTTGGAATATCTGAGTCAAACTCGCATCTCATCAGACAGAGTGTAAATTTGCGCCTAACATTTtaacaagttaaaaaaatactcGAGTTGGagtgaaatattattattattattattttattaatagtaatattttcCAAATCATTATAATgctacacacatatatattattattattattattattattattattattattgttatttaaatattactatttttattttatttttgtccccAAATTTAGACAGTGATCTTGCGACTTAACTTCTTTGAGTTTACATAATGGAATTAACcgaaataatatatttattattcatagtATATTATCCAGGAAAACATCATTTTAGCAAGCTATTGCAACTCCTGTGTAAAATGGGGTgtgtttcatgtaaattatatgtaaataaggTAAAATCAGGGCGTGTCATATGCATATGACGTGTAAATAAGGGGCTAGTGGGTGGAGCCTAGTGGGTGGAGCTTGCGTTCACGCAGCTGAAGCTGATTCGTTTTGCTTAAATCACGACTCATTTTGATGCTGGATGATAACTTTATGAATCAGATGTGgatttgttcatattttgaCGCAACGTTGACGGATAAGAGCCAAGAAAATAACTGACAAAGCggaaaaatactaaaaaaaaaaaaacaggtgtgtgtaagtCCCTTCTGGCACTGATCCTCTAACCAATCAAATTCATTACATGTGTTTACATGTGtgcttatatgtgtgtgtgtgtgtgtgtgtgtttgttgttcagGGAAGGGAAAGGGCATGCTTgggattgtgtgtatgtgtatatgtgtgtgtatatgtgtgtgtgtggtttatgtgTAGGCGTTGAGGCGCTCTTTGGAGCGAGTGGAGTGGATATCGTGTAGCTCCTGCTCCTCCTTGCTCTTGATGTCCTCGTACTTCTGCATGCGGCACGCGTCCTTCACGTAGGCCCAGTTCGCTGCCAGGACCATCAGGTAGCACCATGGCGATGACGGCTGCTCCTGCCCCCGCCAGAGCACAGACGAACAAGTGGAACGTCAGATCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47108 lncRNA downstream 509462 2633702 ~ 2984203 (-) False tenm3
TU47237 lncRNA downstream 766191 2725305 ~ 2727474 (-) True G39854
TU47156 lncRNA downstream 1015241 2477692 ~ 2478424 (-) True G39774
TU47081 lncRNA downstream 1353816 2137447 ~ 2139849 (-) True G39707
TU47079 lncRNA downstream 1367018 2123975 ~ 2126647 (-) True G39705
TU47710 lncRNA upstream 56656 3639764 ~ 3640380 (-) True G40278
TU47755 lncRNA upstream 85739 3668847 ~ 3672053 (-) True G40315
TU47756 lncRNA upstream 90042 3673150 ~ 3673811 (-) True G40316
TU47763 lncRNA upstream 119113 3702221 ~ 3712833 (-) True G40323
TU47974 lncRNA upstream 209121 3792229 ~ 3841160 (-) False G40522
XM_026938890.2 mRNA downstream 60536 3331968 ~ 3433129 (-) False wdr17
XM_034302841.1 mRNA downstream 60536 3331968 ~ 3433129 (-) True wdr17
XM_026933968.2 mRNA downstream 199786 3288730 ~ 3293879 (-) True spcs3
XM_034302849.1 mRNA downstream 509586 2220147 ~ 2984079 (-) True tenm3
XM_034302850.1 mRNA downstream 879724 2220147 ~ 2613941 (-) False tenm3
XM_026931999.2 mRNA upstream 100335 3683443 ~ 3699520 (-) False cep44
XM_026931975.2 mRNA upstream 100335 3683443 ~ 3699520 (-) False cep44
XM_026932008.2 mRNA upstream 100335 3683443 ~ 3699520 (-) True cep44
XM_026932020.2 mRNA upstream 100335 3683443 ~ 3699518 (-) False cep44
XM_026931992.2 mRNA upstream 100335 3683443 ~ 3699324 (-) False cep44
trnah-gug_3 other downstream 459112 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 459728 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 460862 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 1319914 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 1514134 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 962476 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 1620598 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 1641922 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 2173603 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 3578366 7161474 ~ 7204151 (-) False lef1

Expression Profile