RNA id: TU47755


Basic Information

Item Value
RNA id TU47755
length 3207
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G40315
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3668847 ~ 3672053 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagcagtgtTAGTTGTCAGAATTCCTGATATTCAAGGTTTTGGTATCGGTATCCaaacaattttaacaaaatgaattaaaattcaaataatgcAGAATGTTAGAGCAACAGCACAAATTAATCActgtagcattattattatgatgattattgttattgttattattgttaattacTGTTAGACAAACAAATCTATGcagcattttgtctttttttctccatcttttctTCTGGGCAGTCTGGGAGAAAGTTAAATACTGTGCTTAAAACAAAGTAGTAATTTGCTTATGATTTTTATCCAAAACATCTTACAGTAATATTAGAATCCAGTCGAAGCACaaagctgagcagttgagagttCGACTCAGTGCTGAGATTTGAATGTACAACTTTCTGGgcactgcagtgtttttggtgtttgttaAGCAACTCTTTCACATGTGAGGTTAAAGCGCTTTACTGTGCGCTTGGCTGAGCGAATCCCCAGCTGTACTGCAGATAGCAGATGAGGTGAAAGCAGTCGCTTATCTTTCAGCAGAGGCGTATCACAgccagcagttatagaaaataacCTACACATTCTTATCATCTGTTCTCACTCGTCCACACCCACTACAGCCTCGGAGCCAAGTCAAAGTGTGAAAGTTTTCTCTTCATGTAACGCACGCGTGTGCTTTCTGTAGATGAACGCTAATGTACACAAATGTAGCCGTGCTTGTCTGAAAGGTTTCGGTCACACAGCTCACACCCAGCGTGTCATGCTAACCCTCTCATTACACGCTTTCACATCGTGACTGAAGCGAATTCCACAGCCTTGTCTTTATGTAATCTTGtatcaaacatacacacattgttTGAAACCATGAACCTCTGCAATGCAGAATGTTCTGCATGTTTCCTTTCTTCTACTAGCTTCCTGTTCGGCTGCATACCTGAGATAAACTGGGAGCGAACTGGGAAATCACATCACATGACCAGTAAAAGTGCTCAGGCTGTTTATGATGGTGTGTTGTAAGAGTGTATTGGTGTGACGAAtggaattttacattttcataaaatCGTGTGCTGTTTATGTCAATGGCATGAAAACAACTGGGAAATGTAGACACTGAAATTGAAGTTTTATTCAATATTTCGACCAAAAATGGTCGAAATATTGAATAAGAAAGCATAAGtatattttagcaaaataacATGGAACATTTTTATCTACACTACTTTCTATCCtttccttgaaaaaaaaaagatcacgtGAACTCCATTGCGTTCACCATCTTTTCGACATCAATGTGTTTGAGCTACAAcgtggagaaaaaaacatggacatgctccatgtttgtcttttgttagcaacaagctgtgatgagtgatgtacaTTTCCTTCCTCAGAAGAGCACACAatagagtcagtgttacagcAAGTGAATACgctgattgatctaaagctaatacttgtatatacagtataaatcatttaaaggCAAGAAGtgtactttgtttactgctgatgctctgagcggccatgttgatttcacGTCACTtactgaactcagggttgaagAGTTGAGGaggcattttcttcttttttttctactcagACGTCGGTAATTATGAGTTAGTCAAATGCAGGACAACTGTGTGGTAGacctgcattgcattctgggacttttgGTCCAACATCTGCATTACTCCTATGCTGATCTTCTCATTAATGTGATGTTGAACgtcgctggaaaatggtgagtgattAAAGaatctcttgcttttttttttttaggagctaaTAGCGAAACTGACCATTATGTGtaagtgttgattttttttctccttttaaacACCATCGTAAATGCTCCAGCAACAACAATGTCCCACAGTGATGTCAGCGTAGCAGGGCTTCTCATGGGAAAAACGAAAATACAACACCAGGCAAACAAATTAAAGCCGTAATCACtaaacatcataaatatttcagtataaacatatttaacatgtttgagggtggagttttcctttaaacaaaaaaaaagcactattaTGGAAATGTTTGTGTTAACATTCCTACAATGTTAGTGTTACATGCGAACTTTACTAGGATTGAAACCGTTAGCTTGACTTGTGGCAAAACCCTAAAAAGTCTTTTTTGCGCGCTGTTCCTACTTTTATATTGTAGAGCTGCATATAAAGGCAGATGTGGCCTAAAATTGATCATTTACCACCCAGGAAGAATGTTTACGAGTAAAACCAGCCGCACTGCCTGAGCCCAGTCAATCAGCATGTTTACAGCCTTTTGTTTGCAGCTCCGGCACATTAAGTATAATTAAAAGGTGTTTAAGTGCACTGAATCATCTGCATGTGTGCGTTTAGGCGGCTGAACACGTAAACACAGGTGCAGGGTGAAAAATTTATGGAGGccacgtgtgtgtttgtgcgagTTTAATCTCATATCATTTATGAAAGCATGATTAGCCACGGTTTACAATAAATGACTGTAATACGCCAAATCCACGCCAGTTTTTTTGGATCATTTCCATCTCCGAatgaaagaagagaaggaaCGGATTCCTTTCATCATACACATGTTTACCTTTCACATATTCCTGCTGTGTGCGGGGCCTGTACAATTACACAAAGAGGAATTCATTCCACTGTAAAGTAGTCTTCTGTCTTTATCTTATCAGGCTATACAGCATACTTGTGCAGCttattgtaatgtttaaagcCTTTAAAGTCACCGCAAACCTTGAAAAGCGAGTCAGTGGTTGTTCCACATTCTGTTAAGGAGCAGGAAGCTGAGTATCTCAGTGGAACGCAGCAAAGTACTTTTgtatcataaaatataacagccaatcagcttcCGATATGCAAATGAGGGCAAAACAACAAGCGTTTAGCAGAGAAAGGAGAcgtttacatatttacaaatctGGACTTCTTGATGAGGGTTAACGTGTAAGAACTTTTGTGCCAACAGAAGTTAACAATTTCTTAAACATCATTTATAGCACAGCGCTGATGAATactgtgttgattaattttctagaacagcagctctgacagtagtgcagctgcaaattatattaatgtgtcGTTCTAActattatcgtttctatagcaacagctcattcacaggacttcacattaatgtaattaaattaatgtgtgtaactgttgatgaATTGGTGAAggtttctataaggagatgtttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47710 lncRNA downstream 28467 3639764 ~ 3640380 (-) True G40278
TU47681 lncRNA downstream 85739 3493665 ~ 3583108 (-) False G40250
TU47679 lncRNA downstream 161341 3502831 ~ 3507506 (-) True G40250
TU47108 lncRNA downstream 684644 2633702 ~ 2984203 (-) False tenm3
TU47237 lncRNA downstream 941373 2725305 ~ 2727474 (-) True G39854
TU47756 lncRNA upstream 1097 3673150 ~ 3673811 (-) True G40316
TU47763 lncRNA upstream 30168 3702221 ~ 3712833 (-) True G40323
TU47974 lncRNA upstream 120176 3792229 ~ 3841160 (-) False G40522
TU47975 lncRNA upstream 138815 3810868 ~ 3841160 (-) True G40522
XR_003404606.2 lncRNA upstream 146998 3819051 ~ 3838182 (-) True LOC113545372
XM_026938890.2 mRNA downstream 235718 3331968 ~ 3433129 (-) False wdr17
XM_034302841.1 mRNA downstream 235718 3331968 ~ 3433129 (-) True wdr17
XM_026933968.2 mRNA downstream 374968 3288730 ~ 3293879 (-) True spcs3
XM_034302852.1 mRNA downstream 1147349 2220147 ~ 2521498 (-) False tenm3
XM_026931999.2 mRNA upstream 11390 3683443 ~ 3699520 (-) False cep44
XM_026931975.2 mRNA upstream 11390 3683443 ~ 3699520 (-) False cep44
XM_026932008.2 mRNA upstream 11390 3683443 ~ 3699520 (-) True cep44
XM_026932020.2 mRNA upstream 11390 3683443 ~ 3699518 (-) False cep44
XM_026931992.2 mRNA upstream 11390 3683443 ~ 3699324 (-) False cep44
trnah-gug_3 other downstream 634294 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 634910 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 636044 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 1495096 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 1689316 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 873531 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 1531653 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 1552977 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 2084658 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 3489421 7161474 ~ 7204151 (-) False lef1

Expression Profile