Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU47756 |
| length | 662 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G40316 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 3673150 ~ 3673811 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU47755 | lncRNA | downstream | 1097 | 3668847 ~ 3672053 (-) | True | G40315 |
| TU47710 | lncRNA | downstream | 32770 | 3639764 ~ 3640380 (-) | True | G40278 |
| TU47681 | lncRNA | downstream | 90042 | 3493665 ~ 3583108 (-) | False | G40250 |
| TU47679 | lncRNA | downstream | 165644 | 3502831 ~ 3507506 (-) | True | G40250 |
| TU47108 | lncRNA | downstream | 688947 | 2633702 ~ 2984203 (-) | False | tenm3 |
| TU47763 | lncRNA | upstream | 28410 | 3702221 ~ 3712833 (-) | True | G40323 |
| TU47974 | lncRNA | upstream | 118418 | 3792229 ~ 3841160 (-) | False | G40522 |
| TU47975 | lncRNA | upstream | 137057 | 3810868 ~ 3841160 (-) | True | G40522 |
| XR_003404606.2 | lncRNA | upstream | 145240 | 3819051 ~ 3838182 (-) | True | LOC113545372 |
| TU47972 | lncRNA | upstream | 165007 | 3838818 ~ 3840942 (-) | True | G40521 |
| XM_026938890.2 | mRNA | downstream | 240021 | 3331968 ~ 3433129 (-) | False | wdr17 |
| XM_034302841.1 | mRNA | downstream | 240021 | 3331968 ~ 3433129 (-) | True | wdr17 |
| XM_026933968.2 | mRNA | downstream | 379271 | 3288730 ~ 3293879 (-) | True | spcs3 |
| XM_034302852.1 | mRNA | downstream | 1151652 | 2220147 ~ 2521498 (-) | False | tenm3 |
| XM_026931999.2 | mRNA | upstream | 9632 | 3683443 ~ 3699520 (-) | False | cep44 |
| XM_026931975.2 | mRNA | upstream | 9632 | 3683443 ~ 3699520 (-) | False | cep44 |
| XM_026932008.2 | mRNA | upstream | 9632 | 3683443 ~ 3699520 (-) | True | cep44 |
| XM_026932020.2 | mRNA | upstream | 9632 | 3683443 ~ 3699518 (-) | False | cep44 |
| XM_026931992.2 | mRNA | upstream | 9632 | 3683443 ~ 3699324 (-) | False | cep44 |
| trnah-gug_3 | other | downstream | 638597 | 3034482 ~ 3034553 (-) | True | trnah-gug_3 |
| trnah-gug_2 | other | downstream | 639213 | 3033866 ~ 3033937 (-) | True | trnah-gug_2 |
| trnae-uuc | other | downstream | 640347 | 3032732 ~ 3032803 (-) | True | trnae-uuc |
| TU47094 | other | downstream | 1499399 | 2173358 ~ 2173751 (-) | True | G39720 |
| TU46993 | other | downstream | 1693619 | 1977326 ~ 1979531 (-) | False | lgi2b |
| XR_004577883.1 | other | upstream | 871773 | 4545584 ~ 4609450 (-) | False | dclk2a |
| TU48529 | other | upstream | 1529895 | 5203706 ~ 5227923 (-) | False | lsm6 |
| TU48528 | other | upstream | 1551219 | 5225030 ~ 5227923 (-) | False | lsm6 |
| XR_004577821.1 | other | upstream | 2082900 | 5756711 ~ 5819513 (-) | False | gab1 |
| XR_004577908.1 | other | upstream | 3487663 | 7161474 ~ 7204151 (-) | False | lef1 |
