RNA id: TU47763


Basic Information

Item Value
RNA id TU47763
length 901
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G40323
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3702221 ~ 3712833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTctcaacattttattttttttatacaatctAGAAGTATTTTAGTCCAGTGTTGTCATTCAGAAACCTTTCTCAAAACAATTATCTGCTAAtttcttaatattaaataaatctgatcAAACATAAGAGAGTTTCATTGTTATGGATTTAATTCTGCAATATAGCTCTGCTGTCAGGAGAaaattcaactttatttatcacattcttttattattctgtCCTGTAAGGCCTCTTGGAaagctaatatatatatatttttttagaaataatagGCATGTGCcagtattacatttaaaaaaaaaaaaaaacaaaaacaaaaacaaatgatcaTGAACATAAGCTTacctttaattttattatattacattatcatgatatttgaaggaaaaaaaaaaaaaaagtgtgactgAACTCTGGGACCTTACTAAGGCCATTACATCTTCACGTCTAGTGCATGTGACAGTTATTTACTCTCAGGACTCCAGTACGTTCAGCTTGGAGAAATCAAACGCAGCAGTAGTGATGATCATTTCAAACGACAATTCAAAGCACTCATTTCCATGATACCAAGATCATCCAGGTTCTAAAATAGTCTAAAAATATAGTGTAGGTGATTACAGGCACATGCCTACtaaacacataataataataataataataataataataattattaggcCAAATCATTAGATAATGTTGAAGAATTGTTTCCTGAATAGTCAGAGATTTTCTCAGAACAACAGTGGAATGATTGCAGGgaagtaaatggaaaaaaaaagtcacaataaaaCAGATATACCGGACTTTTGTTTGCATCATTAGTATTCATTTGCATGATGGACGACATCAATGATGCgagtggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47756 lncRNA downstream 28410 3673150 ~ 3673811 (-) True G40316
TU47755 lncRNA downstream 30168 3668847 ~ 3672053 (-) True G40315
TU47710 lncRNA downstream 61841 3639764 ~ 3640380 (-) True G40278
TU47681 lncRNA downstream 119113 3493665 ~ 3583108 (-) False G40250
TU47679 lncRNA downstream 194715 3502831 ~ 3507506 (-) True G40250
TU47974 lncRNA upstream 79396 3792229 ~ 3841160 (-) False G40522
TU47975 lncRNA upstream 98035 3810868 ~ 3841160 (-) True G40522
XR_003404606.2 lncRNA upstream 106218 3819051 ~ 3838182 (-) True LOC113545372
TU47972 lncRNA upstream 125985 3838818 ~ 3840942 (-) True G40521
XR_004577552.1 lncRNA upstream 775713 4488546 ~ 4496696 (-) True LOC117596430
XM_026931999.2 mRNA downstream 2701 3683443 ~ 3699520 (-) False cep44
XM_026931975.2 mRNA downstream 2701 3683443 ~ 3699520 (-) False cep44
XM_026932008.2 mRNA downstream 2701 3683443 ~ 3699520 (-) True cep44
XM_026932029.2 mRNA downstream 2701 3684160 ~ 3699520 (-) False cep44
XM_026932020.2 mRNA downstream 2703 3683443 ~ 3699518 (-) False cep44
XM_034302839.1 mRNA upstream 130646 3843479 ~ 3869764 (-) True galnt7
XM_034302840.1 mRNA upstream 130646 3843479 ~ 3869764 (-) False galnt7
XM_026933253.2 mRNA upstream 164357 3877190 ~ 4089517 (-) True galntl6
XM_026933264.2 mRNA upstream 179703 3892536 ~ 4089518 (-) False galntl6
XM_034302098.1 mRNA upstream 179851 3892684 ~ 4089518 (-) False galntl6
trnah-gug_3 other downstream 667668 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 668284 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 669418 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 1528470 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 1722690 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 832751 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 1490873 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 1512197 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 2043878 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 3448641 7161474 ~ 7204151 (-) False lef1

Expression Profile