RNA id: TU48050


Basic Information

Item Value
RNA id TU48050
length 367
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G40591
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4228182 ~ 4228548 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACgtcttaaatcatttttagaaaaacaatTCAATGCCGCttcattttggtgaaaaataGGAGGTATTTGTAATGTGACATAAATGGCCCATACTGAGACGGGTAATAACACACTGTGTTCTCTTAGCACCGAgatatgtgtggtggtctgggaaaaacTATCGGATGTTGCTGTGACTGAATTCCGGAAAACAGCCAAGAATGCTGAAAAATCAGgtaaatgcatataaaatgcTTGGGCATCTCTACTTTGAAGAAACATATGTAAGTACAGTTTAACAAAAcaatatggaaatgttttatttactttttaatcttgcctacgtattcttcctgcaaagatcaggTTGTGTAAGGAGTCAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48049 lncRNA upstream 751 4227193 ~ 4227431 (+) True G40590
TU48045 lncRNA upstream 97860 4130115 ~ 4130322 (+) True G40586
TU47821 lncRNA upstream 363182 3864696 ~ 3865000 (+) True G40374
TU47719 lncRNA upstream 542977 3683343 ~ 3685205 (+) True G40287
XR_004577906.1 lncRNA upstream 703061 3515101 ~ 3525121 (+) True LOC117596918
TU48051 lncRNA downstream 844 4229392 ~ 4229622 (+) True G40592
TU48112 lncRNA downstream 56152 4284700 ~ 4289429 (+) True G40644
TU48135 lncRNA downstream 186038 4414586 ~ 4414796 (+) True G40665
XR_004577882.1 lncRNA downstream 199451 4427999 ~ 4430867 (+) True LOC117596893
TU48156 lncRNA downstream 233922 4462470 ~ 4512698 (+) False G40683
XM_026944471.2 mRNA upstream 387320 3838726 ~ 3840862 (+) True hmgb2a
XM_026944688.2 mRNA upstream 393556 3831867 ~ 3834626 (+) True LOC113545357
XM_034302875.1 mRNA upstream 393556 3831958 ~ 3834626 (+) False LOC113545357
XM_026933871.2 mRNA upstream 422353 3802564 ~ 3805829 (+) True hand2
XM_026944703.2 mRNA upstream 515346 3700579 ~ 3712836 (+) True fbxo8
XM_026942823.2 mRNA downstream 255000 4483548 ~ 4487275 (+) True scpp1
XM_026933138.2 mRNA downstream 267084 4495632 ~ 4499516 (+) False tnip2
XM_026933147.2 mRNA downstream 267084 4495632 ~ 4499499 (+) False tnip2
XM_026933131.2 mRNA downstream 267086 4495634 ~ 4500384 (+) True tnip2
XM_034302676.1 mRNA downstream 435768 4664316 ~ 4771604 (+) True nr3c2
TU47789 other upstream 393571 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 2062398 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 2136876 2085465 ~ 2091306 (+) False stox2a
XR_003404319.2 other downstream 1035034 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 1089986 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 2975402 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 3420650 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 4237199 8465747 ~ 8466312 (+) True G42685

Expression Profile