Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU48112 |
| length | 1013 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G40644 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 4284700 ~ 4289429 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU48051 | lncRNA | upstream | 55078 | 4229392 ~ 4229622 (+) | True | G40592 |
| TU48050 | lncRNA | upstream | 56152 | 4228182 ~ 4228548 (+) | True | G40591 |
| TU48049 | lncRNA | upstream | 57269 | 4227193 ~ 4227431 (+) | True | G40590 |
| TU48045 | lncRNA | upstream | 154378 | 4130115 ~ 4130322 (+) | True | G40586 |
| TU47821 | lncRNA | upstream | 419700 | 3864696 ~ 3865000 (+) | True | G40374 |
| TU48135 | lncRNA | downstream | 125157 | 4414586 ~ 4414796 (+) | True | G40665 |
| XR_004577882.1 | lncRNA | downstream | 138570 | 4427999 ~ 4430867 (+) | True | LOC117596893 |
| TU48156 | lncRNA | downstream | 173041 | 4462470 ~ 4512698 (+) | False | G40683 |
| TU48157 | lncRNA | downstream | 202480 | 4491909 ~ 4512698 (+) | True | G40683 |
| TU48185 | lncRNA | downstream | 253180 | 4542609 ~ 4545083 (+) | True | G40704 |
| XM_026944471.2 | mRNA | upstream | 443838 | 3838726 ~ 3840862 (+) | True | hmgb2a |
| XM_026944688.2 | mRNA | upstream | 450074 | 3831867 ~ 3834626 (+) | True | LOC113545357 |
| XM_034302875.1 | mRNA | upstream | 450074 | 3831958 ~ 3834626 (+) | False | LOC113545357 |
| XM_026933871.2 | mRNA | upstream | 478871 | 3802564 ~ 3805829 (+) | True | hand2 |
| XM_026944703.2 | mRNA | upstream | 571864 | 3700579 ~ 3712836 (+) | True | fbxo8 |
| XM_026942823.2 | mRNA | downstream | 194119 | 4483548 ~ 4487275 (+) | True | scpp1 |
| XM_026933138.2 | mRNA | downstream | 206203 | 4495632 ~ 4499516 (+) | False | tnip2 |
| XM_026933147.2 | mRNA | downstream | 206203 | 4495632 ~ 4499499 (+) | False | tnip2 |
| XM_026933131.2 | mRNA | downstream | 206205 | 4495634 ~ 4500384 (+) | True | tnip2 |
| XM_034302676.1 | mRNA | downstream | 374887 | 4664316 ~ 4771604 (+) | True | nr3c2 |
| TU47789 | other | upstream | 450089 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 2118916 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 2193394 | 2085465 ~ 2091306 (+) | False | stox2a |
| XR_003404319.2 | other | downstream | 974153 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 1029105 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 2914521 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 3359769 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 4176318 | 8465747 ~ 8466312 (+) | True | G42685 |
