RNA id: TU48288


Basic Information

Item Value
RNA id TU48288
length 1843
lncRNA type sense_over
GC content 0.37
exon number 1
gene id nr3c2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4664316 ~ 4771604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgttacattgttAGTTTACATGCTCGCTGTTGAAGTGTAAAACGATGATAAAGTGGGAATATAGAGAAGCCAGAACGGTTCTTTAGACCCAATCAGTCCCGTGTCACTTGTTTGTGTACATACACTGCTACTGCGCTGATGAACGTGAGAAGTATGTAAAGGAAAATAAGTTGTCAAATATTTgatccttttctcttttttttaacttctgctccctgtttttttttctgatttctttttatatataagtacataaatacatatgaaTATATGTAAATGAGAATAAATGTTGAAAGGTTCATAGGATGTATGGCAAAGTATTTTTGAGAGAAATCTATTttgctggtttaaaaaaagaaaagaaaatagtaCTTTGTCTACAAAGACTATccaagaaattttttttttgtaaagtgaaTTGTTTATGCATgctttttaaagatgtttacaGTGTATTTAAGAAGGGAAACTGTGCCTTTTTATCTTGCGTGAGTTACCATTTTACAGTATCTATCtattgtaaataaatcagtgcgtTATTTTGTTGCTTTGTATGGAACATTTCTACTTTAACCATTTGTTGgaagttgaaaaaaatgttagtgaCTCCCctttcattttgaatttttatttcgtcgctccttgtgtgtgtgtatgaatttaGCTCAACGCCCCTGTAATTATGAGTGATATGAATGTACATTAAATTGTATGTACCTGAGAGCTACTTTTACAATCTGAATGTGAGATTGactaaacctgttttttttatgctggtTTCTTCCCTTTGCTTTGCTAAGCGAAGGGATTCGAACCGGGTGCTGGCGCAACAGCACgctaaattaaagaaataacaaTCGCCAAACACGTTGCCAAACTTTGCTATGCTTTTGGTTGCCGCAAATCACTCTGTCATCCAGCATTTGTCCATTTTAGAACAGCCACACGCTTAGTAATGCTTCCTCAGATTTGGATTAGAtcaaaaggaaggaaggagggaaggaaggagggaaggaaggcgggaaggaaggaaggaaggcgggaaggagggaaggaaggaaggaaggaaggaaggaaggaagaacatgcacactGTGAGATGTGGACATTAGAAATCCTCACATTGTCTGTTCACACCACAGGAAGGACTTTATAGACTTAAAGACAAGGAAGTTAAGATTCAgactataaaaattaaaaacaaatcgAATGACAGAGTTGAATTACGACGACCTCAAGAGATTAAATTCAGTCATGGTGCTGGAGACGACACACACTCGTACTGTTTGGGTCTCAGAACCATCCAGGAAGCGGCGAtctttcttctgtttcatttgaaatttgaTTTCATCTTGCACAGAGGTAGCGCTTAactgttttgtacattttttttctataatattgATACTATGCATTTGTATAAAAGCATTTGCGCGTCTTTCTGCGACGTAAGGGCAAAGTGTGTTTCCTGTCTCAGACCACCacgttaaacacacacagcttcttcttcttcttcatgtctcTGTGCAGGACTGTTAATGAAGGACAGTCAAAACGctcccttttttattttattttttttgtccagtgtGTCACatgtttttggggaaaaaacttaATGCTGGATAATGAGTCCAGCTCCAAGAGACAAAGCCatatctcctcctcctcctcctcctgtttgTGATGAAAACCCATTTCTTGTTCATATTggactttcttttttctgacaGACTTTTTAATTCTAATGCTTTGTACACTACCGGTTAGCGAAACCCACTCAACTGTACGGAAATATTCAACATCAGCAAACGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48289 lncRNA upstream 436 4767566 ~ 4769222 (+) False nr3c2
TU48312 lncRNA upstream 66125 4703334 ~ 4703533 (+) True G40825
TU48306 lncRNA upstream 80735 4688445 ~ 4688923 (+) True G40819
TU48305 lncRNA upstream 81297 4687982 ~ 4688361 (+) True G40818
TU48304 lncRNA upstream 83045 4685947 ~ 4686613 (+) True G40817
TU48342 lncRNA downstream 10831 4782331 ~ 4782530 (+) True G40854
TU48357 lncRNA downstream 21421 4792921 ~ 4802135 (+) True G40863
TU48405 lncRNA downstream 127991 4899491 ~ 4902619 (+) True G40908
TU48512 lncRNA downstream 307799 5079299 ~ 5079861 (+) True G41006
TU48521 lncRNA downstream 358620 5130120 ~ 5130386 (+) True G41015
XM_026933131.2 mRNA upstream 269274 4495634 ~ 4500384 (+) True tnip2
XM_026933138.2 mRNA upstream 270142 4495632 ~ 4499516 (+) False tnip2
XM_026933147.2 mRNA upstream 270159 4495632 ~ 4499499 (+) False tnip2
XM_026942823.2 mRNA upstream 282383 4483548 ~ 4487275 (+) True scpp1
XM_026944471.2 mRNA upstream 928796 3838726 ~ 3840862 (+) True hmgb2a
XM_034302684.1 mRNA downstream 111496 4882996 ~ 4892379 (+) True prmt9
XM_034302686.1 mRNA downstream 111496 4882996 ~ 4892379 (+) False prmt9
XM_034302685.1 mRNA downstream 111496 4882996 ~ 4892379 (+) False prmt9
XM_026940271.2 mRNA downstream 492082 5263582 ~ 5357860 (+) False znf827
XM_026940245.2 mRNA downstream 492082 5263582 ~ 5356735 (+) False znf827
TU47789 other upstream 935047 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 2603874 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 2678352 2085465 ~ 2091306 (+) False stox2a
XR_003404319.2 other downstream 492082 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 547034 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 2432450 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 2877698 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 3694247 8465747 ~ 8466312 (+) True G42685

Expression Profile