RNA id: XM_026934517.2


Basic Information

Item Value
RNA id XM_026934517.2
length 9318
RNA type mRNA
GC content 0.42
exon number 9
gene id nr3c2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4664316 ~ 4771604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttacgtgctCCATATTAAAGTTTATCAAATGATCCAGGCATGGAGTCCAAAAGATACCAAAGTATTTACGAAGGTACAGCCAGAGAAAACAGATGGGCCCAGATGCCAGGATCTATGGAGCAGTGCTGCATGACAGACGAGGGGGGAGCTCTGATGAACAGTGATGTCCTGATGGACATTGTAAATGCGAGTAATGCATCCAGTGTCCCAGCTCCGAAGTGCAAGGAAAGTAGAGGAAAGAAGGCTGACATGCCGATGCCCCAGCTCAGTCCTGACCAGCAGCTCAGCTTCCCTGCATATAACAACTCCATCCACAGCCGCAAACCGGAAGACTCTAAAGAGCTCTCCAAAACTGTTGCTGAATCTATGGGCTTGTATATGAATGCTGCCAGGGAGGCTGAATTTGCCTTTAGCCAGCAGGGCCCACCTGCCGGATGCCAGGGCAGCCCTGGAAAACTGTACCCTCTGCGTGGCAGAGGGATCGAGGACAATCAGTCAGGGACTACTAGGAGCCCCAACATGAAAGCTCCTCCAACATCATTCCCAACTATGTCCCAGTTACCGAATGGTAGTCTTGGCGAGTGTGGGGTAGGCACTGCGCCAACATCTTCCACCTTGGCCACGGTTCTGTCCAGCCCTGCTGAAGACTCCAGCAGCATTTCCAGCCCAAGTGGAAACAACATTGTGACTTCCACCACCAGTCCCACCTACTTTGGCACTAGCCATCCTTCTCTAGGCAGTCCAGCCAGTCTGGGTCCAGTTGGTTCAGGCCTGGTACAGACTCACCGTGTCAACTCAAGCACCTGCAGCCCAGCAGAGTCCAGCACTATGGGTACTCCACCACTAGCAAGCCCCTTTAATGTGATGAAGTCACCCATCTCAAGCCCCCAGAGCATGGGAAGTGTAAGGACACCGCCGTCCTGCAGCAACAACATGAGGTCATCTGTGTCCAGTCCCACAGGAAGTGGTGGTAACTTGAGGCCTTCTGGGTCTAGTCCACCCACAGTTGGTTCCATCGCGATGTCCAGTCCCAGGAACCCCTCCAGGACCTTTTCTGTGTCAAGCCCTCCCAGCAGTCTCGGCTTGGTTCAGAATGACATCCACAGCCCCGATGGCCAAGAGCATGATTTTAAAGGCTTCAAGTTCCCCAAAGTGGAGAGCTTGGATGGGGAAATATTCAATGTTGGCCTGGACTCCATGGGGATGGTCAAATACATCAAAAATGAGCCTGACGGTGAATACAGGAGTATGTGTCTGGGTAACAGCAATGGCAATGTGCCACCTTCGCCATTTCCATCTCATATTAAGACTGAGCCCAACAGGGAAGCAACTTGCACAAATGCACACTATGGGGAACCGCAGCAGCCCATGGGACTCTTCCCAGCTACAGAGACTACATACTTGTCCTTGAGGGATAATATTGATGAATACAATCTCTCCGGGATCCTGGGACCTCCCATTTCTTCTCTTAATGGCAACTATGAGTTTGGTGTGTTTCCAAACAATGACATGCCCAAGGGGATTAAACAGGAGACCAATGATGGCAGCTATTACCAAGAGAATAATAACGTGCCCACGTCAGCTATTGTCGGTGTTAATTCAGGTGGACATTCATTTCATTACCAGATCGGAGCGCAAGGAACAATGTCGTTTTCGCGGCATGACATGCGGGACCAGACAAACTCCTTGTTGAATCTAATTTCTCCAGTTACAGCGCTAATGGAGACATGGAAAACACGCCCAGGCCTGTCACAGGCTCCACTGTCCGCCTGCGGGGAGGGCTACCCAGCCCCAGGCTGTGTCTCTGACACCATGGCAAGCGCTCCTCTAAGACACTCATCCTCGACGGCTAAAGTGTGTTTGGTGTGCGGGGACGAGGCGTCCGGGTGCCACTACGGCGTTGTCACCTGCGGGAGCTGCAAAGTCTTCTTCAAGAGAGCGGTGGAAGGTCAGCACAACTACCTGTGCGCTGGAAGGAACGACTGCATCATTGACAAAATCCGACGGAAGAACTGTCCGGCTTGCCGAGTACGAAAGTGTCTGCAGGCAGGGATGAATCTCGGAGCACGGAAGTCGAAGAAGCTGGGAAAGCTGAAGAGTGTGAGCGAGGACTCGACTCTTCAGAACTCGGAGAAGGAGCTGAGCTCGAACATGGCTCTGGTTCCTCGTGGTGCCTCTGTGGCTCCCTTCCTCTCGCCGTCTGTGTGCAGCGTGCTGGAGCTCATTGAGCCTGAGGTGGTGTTTGCAGGTTACGATAACACGCTACCTGACACCACCGATCACCTCCTCACCAGCCTCAACAAACTTGCCGGCAAGCAGATGGTGCGTGTTGTCAAGTGGGCCAAAGTACTTCCAGGTTTCCGCACATTGCCCATCGAGGACCAAATCATGCTGATCCAGTACTCGTGGATGTGTCTCTCCTCGTTCTCGCTCAGCTGGAGATCCTACAAACACACCAACGCCCAGATGCTCTACTTCGCCCCGGACCTCGTCTTCAATGAGGAGCGCATGCACCAGTCGGCCATGTACGATCTGTGTGTGAGCATGAAGCAGGTCAGTCAGGAGTTTGTCCGTCTGCAGCTCACCTACGAGGAGTTCCTGGCCATGAAAGTCCTGCTGCTTCTCagcacagTGCCCAaggatggcctgaagaaccagGCTGCGTTCGAGGAGATGAGGGTGAACTACATCAAGGAGCTGCGGCGTTCTGTGGGCAAAGCAACAAACAACTCGGGACAGACGTGGCAGCGCTTCTTCCAGCTCACCAAGCTACTGGACGCCATGCATGATCTGGTGGGAAACTTGTTAGACTTCTGCTTCTACACCTTCCGCGAGTCTCAGGCTCTGAAGGTGGAGTTTCCCGAGATGCTGGTGGAGATCATCAGTGACCAGATACCAAAGGTGGAGTCGGGCCTCACACACATCCTTTACTTTCACAAGAAGTGACtggagatgaaaaataaataaataaacaagcaatgaagagatgaaggaatgaatgagaAGCAGAAGAGAGGACACCAAAACcctcagaaagaaagaaagtaagaaagagagggagaaagagaaggccACGTGGGCCAGGCCAGCTTGCTATGCACAACGTCAGGCACGAGCGGAGGCTCAGATGTACGTACGCCAACCTAAACCCCCCGCGCAgggacagacggagagagagagtcgAGTTGTCTGTAGCCAGCCAGTGAACTTTAGAGTTCATTTCTCCTTGCCCCCAAAGACAATGCTGACTATCTATGGATATGAAGCCATATGTTTCTTTGGTAAAGCTGTAGTGCACAGGTACAAGTgtataaataatactaaaacaCAGTTGTATACGGAGACACGGTAATGTCCTTGCCTCTACACTCTACATACAACCTGCAATGAAATATGGAGGCATTTATATTATTTGACTCATCTCAACACTACACATACTTACTCTTTGGATTTACAAtttacagaaaaagagaaaaatatttaaaaaaaattactgtctATAGTATATTTCTGTAGCAACTGTATCATCATTAACAGGTTTTATTTATGGGgtttttttggacaaaaaagAGGCAAAGCGAGGACATTTTCCAAGGGCTACACTACCTAAAATCTGAAAAGTGTGTCTAATTGGTGTGTATTAAACCACAGAGCAGTGTGCACCGGCTTTTACCCTTGtttaaatgaacagaacaaTCAAACCTGAACTGATATGCAAGCCcttcttattttaaaatgaaaaataacaagaaaCTTTTTGTAGTCTTTGGGTACAGATGAGGGAAGGAGCAGTCACATCCCTAACGTAGCTCTCTGAAAAAAATAACCGACTAATACGATGAACGAAAAGCACAGAAGGGCTTTGTTTTTATGACCTTGAGGTAAAGGAGATGCTCAGTACACTGCTCCAGGAAATGAATTTCTATTTCACTACACAGACAGTGCAAATGCTAAACAATCAGTAAGACCATCAGAGCAgaatttagttttgtttaacaCAATAAGTTGttgagagtttaaaaaaaaaatacacttaaatCTCTTCACTGCTTTGTTCGAGTGATCAGCTGTTCTTTTATTCTCTGTACAATCTTTTGCTCCGAATATCAAAGGATGTCTCATGGCAGGCCAGACAGAAAGCgtatcagggaaaaaaataaaataaaatgtgcaactCCAGTACAATAGATCGAACAGGTTATAATGTGCTCATTCagagttaaaggaaaactccagcATCTTTTAAAATGAATCTCTTATCCACTGTATCTGTAGTGTATCTGTGATTACCAAAGACAAGCGTGTCGATggtgaatgaatcaatgaattaATGAAGGTTACTCAAGACTCACTCATGATGGAAGTCTAAAGGCTGTTGTTGTGGCATTAATTAGTTATGAAGTTTATGTGAAACATATTTTGGTAGAACACTTTCATGAATTTCCCCCTCAAAGCTATTTAGAACTGAAGAACTCATTCAATAATTTGATGAAAATTTACGGTTTTTCTTTAACAGTCACCTGTTTCCACTACATGGATACCACAAAACCTTTCTGGGAAAGCGAATGTAacacaaataacattttaatgtttcgCTCCAATATTGGAACGTTGTATAAAACTACACCCAAACCCCTATAAGTGGATATAAAGCATTACGGAAAGATGTGTCTCCAATGAATTTCCGTAAAACATAAAACTATTTCTGTTATTTCAATTGTAATGCGTTCCAAGCACAACCAGACCCCTTACAACTGTCAATGCATTGCAACAATTATTCAACACTGGTTGAAGTTTATTTGAATATTACATGATACAATTGTTGGTACTCATTTTACAGGACTGCTGAAATTTATCATGAGGAAAATCCACAATACAGGAGTCTGGATTATCGTGTTTTGGGTGTACAcgcctgggcaaaaaaaaagggccaagcccaaaatggcttttaattgtcttaacaacaaatcattggtcagaaaatgagcaagaatgaaacaaatgcactcctgagagctcctgtgccaccattcgctcctttacttttgctgcagtgaactgtttggggaaaagctagaagcAGGGCAATTCACTTATATAATTTTCTTGTACACAACGGTAATATagtgataatgattaaaatgtttcgtgaaaattcaaactaacacgtctgggtgtacaacattttccgaaaatatcttctgggatgttttttttttttcttaaaagattagtcattatttggttaacTGCCGCACCTGATGTGGCCCATCgtgggccacaaggcttaaacatttaaagaaatcaaagggaaaagcttcccatactaagctcctttatctgttttgttcaattcttgctaatttcctgaccaatgatttgacAATTAAAAGCCatgttgggcttggcccatttttctTGCCCAGGAGAGTACATTTTGTTAGGACATGTTAGACACGTCCTCATGTTAGATTGTCTTGGTCAGTTCCCGCCCACATGCAAGCTCTGCCCTATCAGACGTCAACTGGGGAGAGTGAAGgataacacgtgcttcctccaaggcACGTGAACCACATCTTTTGAAACTGCTGCATCACAATGCAgcgtaacacacacagaggaaaacgccatctgccctcttccacatacatgagctcacagacactcacGATTTGCTAGTGaagctgtgattgacaggggaaagagagtatgcccctcccacccagagagcacagccagttttacACTCCtgactcccagccatggattGCTGTGATATTTTTGAGATTCAAACTCGCAATCTCCTGACGATAAGGTtaacgcttttctgttgtgccacttggcAGCCATTTTAGAGTGTATTGCTGTAGCTTTGTGTTACATAGTCACTTTTTTATTGAACAACTGTCCTTAgactttcattataaataatattctgtGCTTTTCGCAGTACAAGAAAACTCAACATTCTTGTTTGAGGTAATCACATATATGTTACAGATAATAAGATTAGTTTGAAAAGTTCTTGAAGATGAAGAttagtttggggaaaaaaaaaaacttcttttgtGTAATTCTTTGATGCCGACACCAGaaattaaagtcattttttataaaatttatttaatttatcagTGATTGTCTCTGTGTAATTGATGCGTATTTCCAGTAAACATACTTAAGCCCCACCCACCAGTTTCagggaccaatcagaatggccagagtgttttgttaaatatatatcataATCTAATCACACTACAGACAGCTACTAAACCAGCTCCCTTGTGACAATGAAATGAAGTTTttaggttaataataataataataataataataataataaaaagaagcaTTAAAAGAgtgtaattactttttttttaaaaacagtctcTTTGGTTCTAACACGgtgcttttaatatttaaaaaaaagaaaaaccctaGGTGTAAGATTTTCAGTAGCTGCACATGTACACTTAgatgtagaagaagaagaactgcTCTATTCTCACGCGTACAGCTTTCatacagtaaacactaacaACACTAAACAGCACTAAAAGCTACAGTAGCCTCCAGCTTCGGACGTATACACGCTGCAGAAATAATGTTGCACATATACTCATAGTTTCCACATTTATGTTGCTGTACAGAGGACGTTTCCTTTCGTATCCGGTTATAATTAGTCCACTTGGGGGAAGTCCTactgtttaataaaactgtGGAGGTGAAACAGTGATGCTACTGATgaaagtgagaggaaaaaaaaaagcttgagtTTGTtctgtaatgctgtaatgtaagACGGTGACAGAGGAGACGGACGGGAGGCTGAGGGGCGTCGCTCGGAAAGCGTTCCCAACCGGATTCACGCAAACATCTCCACAAATATCACTAAAGtacactaatacacaccaataataatagtaatgaggatgatgatgatgatgattattataataatttttattattattattatattattattattcattcctTAATAACctcttatttcattattattattattattattattattattattattatcacagtTGATGgacttatattaaaaataatagtaataatatatgTATTGCAACAATAATAActacagcattattattattattattatgattatttgtgtgttattagtaatatttttacagtattttagtGATATATTTGGACACATGTTTCAGTGACTCGTCTCCTGCCGCGTGATTAGCTTCTGATTTGCACAGCAGATATAATGTGATGTCGGAGAGGACcggtgtgtgttgggtttgtttCAGTAATATGACGTGTGGGGAGGGAGGGAATGGGATAAGGCACTTTTCTTCACatcgccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacattgttAGTTTACATGCTCGCTGTTGAAGTGTAAAACGATGATAAAGTGGGAATATAGAGAAGCCAGAACGGTTCTTTAGACCCAATCAGTCCCGTGTCACTTGTTTGTGTACATACACTGCTACTGCGCTGATGAACGTGAGAAGTATGTAAAGGAAAATAAGTTGTCAAATATTTgatccttttctcttttttttaacttctgctccctgtttttttttctgatttctttttatatataagtacataaatacatatgaaTATATGTAAATGAGAATAAATGTTGAAAGGTTCATAGGATGTATGGCAAAGTATTTTTGAGAGAAATCTATTttgctggtttaaaaaaagaaaagaaaatagtaCTTTGTCTACAAAGACTATccaagaaattttttttttgtaaagtgaaTTGTTTATGCATgctttttaaagatgtttacaGTGTATTTAAGAAGGGAAACTGTGCCTTTTTATCTTGCGTGAGTTACCATTTTACAGTATCTATCtattgtaaataaatcagtgcgtTATTTTGTTGCTTTGTATGGAACATTTCTACTTTAACCATTTGTTGgaagttgaaaaaaatgttagtgaCTCCCctttcattttgaatttttatttcgtcgctccttgtgtgtgtgtatgaatttaGCTCAACGCCCCTGTAATTATGAGTGATATGAATGTACATTAAATTGTATGTACCTGAGAGCTACTTTTACAATCTGAATGTGAGATTGactaaacctgttttttttatgctggtTTCTTCCCTTTGCTTTGCTAAGCGAAGGGATTCGAACCGGGTGCTGGCGCAACAGCACgctaaattaaagaaataacaaTCGCCAAACACGTTGCCAAACTTTGCTATGCTTTTGGTTGCCGCAAATCACTCTGTCATCCAGCATTTGTCCATTTTAGAACAGCCACACGCTTAGTAATGCTTCCTCAGATTTGGATTAGAtcaaaaggaaggaaggagggaaggaaggagggaaggaaggcgggaaggaaggaaggaaggcgggaaggagggaaggaaggaaggaaggaaggaaggaaggaagaacatgcacactGTGAGATGTGGACATTAGAAATCCTCACATTGTCTGTTCACACCACAGGAAGGACTTTATAGACTTAAAGACAAGGAAGTTAAGATTCAgactataaaaattaaaaacaaatcgAATGACAGAGTTGAATTACGACGACCTCAAGAGATTAAATTCAGTCATGGTGCTGGAGACGACACACACTCGTACTGTTTGGGTCTCAGAACCATCCAGGAAGCGGCGAtctttcttctgtttcatttgaaatttgaTTTCATCTTGCACAGAGGTAGCGCTTAactgttttgtacattttttttctataatattgATACTATGCATTTGTATAAAAGCATTTGCGCGTCTTTCTGCGACGTAAGGGCAAAGTGTGTTTCCTGTCTCAGACCACCacgttaaacacacacagcttcttcttcttcttcatgtctcTGTGCAGGACTGTTAATGAAGGACAGTCAAAACGctcccttttttattttattttttttgtccagtgtGTCACatgtttttggggaaaaaacttaATGCTGGATAATGAGTCCAGCTCCAAGAGACAAAGCCatatctcctcctcctcctcctcctgtttgTGATGAAAACCCATTTCTTGTTCATATTggactttcttttttctgacaGACTTTTTAATTCTAATGCTTTGTACACTACCGGTTAGCGAAACCCACTCAACTGTACGGAAATATTCAACATCAGCAAACGACAGATGCAACTAGTTCCTCTAAACTGTATATCTTGATTCAAATATTGCCATAACTGTGTTTGGACAAATATCAAGGGATTCCAATAAATCCACTAACACCTGCAGCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48185 lncRNA upstream 121969 4542609 ~ 4545083 (+) True G40704
TU48156 lncRNA upstream 154354 4462470 ~ 4512698 (+) False G40683
TU48157 lncRNA upstream 154354 4491909 ~ 4512698 (+) True G40683
XR_004577882.1 lncRNA upstream 236185 4427999 ~ 4430867 (+) True LOC117596893
TU48135 lncRNA upstream 252256 4414586 ~ 4414796 (+) True G40665
TU48342 lncRNA downstream 10727 4782331 ~ 4782530 (+) True G40854
TU48357 lncRNA downstream 21317 4792921 ~ 4802135 (+) True G40863
TU48405 lncRNA downstream 127887 4899491 ~ 4902619 (+) True G40908
TU48512 lncRNA downstream 307695 5079299 ~ 5079861 (+) True G41006
TU48521 lncRNA downstream 358516 5130120 ~ 5130386 (+) True G41015
XM_026933131.2 mRNA upstream 166668 4495634 ~ 4500384 (+) True tnip2
XM_026933138.2 mRNA upstream 167536 4495632 ~ 4499516 (+) False tnip2
XM_026933147.2 mRNA upstream 167553 4495632 ~ 4499499 (+) False tnip2
XM_026942823.2 mRNA upstream 179777 4483548 ~ 4487275 (+) True scpp1
XM_026944471.2 mRNA upstream 826190 3838726 ~ 3840862 (+) True hmgb2a
XM_034302684.1 mRNA downstream 111392 4882996 ~ 4892379 (+) True prmt9
XM_034302686.1 mRNA downstream 111392 4882996 ~ 4892379 (+) False prmt9
XM_034302685.1 mRNA downstream 111392 4882996 ~ 4892379 (+) False prmt9
XM_026940271.2 mRNA downstream 491978 5263582 ~ 5357860 (+) False znf827
XM_026940245.2 mRNA downstream 491978 5263582 ~ 5356735 (+) False znf827
TU47789 other upstream 832441 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 2501268 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 2575746 2085465 ~ 2091306 (+) False stox2a
XR_003404319.2 other downstream 491978 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 546930 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 2432346 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 2877594 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 3694143 8465747 ~ 8466312 (+) True G42685

Expression Profile