Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU48294 |
| length | 313 |
| lncRNA type | intronic |
| GC content | 0.43 |
| exon number | 1 |
| gene id | G40807 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 4672132 ~ 4672444 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU48293 | lncRNA | upstream | 231 | 4671628 ~ 4671901 (+) | True | G40806 |
| TU48292 | lncRNA | upstream | 662 | 4670867 ~ 4671470 (+) | True | G40805 |
| TU48291 | lncRNA | upstream | 1588 | 4669754 ~ 4670544 (+) | True | G40804 |
| TU48185 | lncRNA | upstream | 127049 | 4542609 ~ 4545083 (+) | True | G40704 |
| TU48156 | lncRNA | upstream | 159434 | 4462470 ~ 4512698 (+) | False | G40683 |
| TU48295 | lncRNA | downstream | 219 | 4672663 ~ 4674750 (+) | True | G40808 |
| TU48296 | lncRNA | downstream | 2524 | 4674968 ~ 4675474 (+) | True | G40809 |
| TU48297 | lncRNA | downstream | 3130 | 4675574 ~ 4676784 (+) | True | G40810 |
| TU48298 | lncRNA | downstream | 4665 | 4677109 ~ 4678808 (+) | True | G40811 |
| TU48299 | lncRNA | downstream | 6645 | 4679089 ~ 4679533 (+) | True | G40812 |
| XM_026933131.2 | mRNA | upstream | 171748 | 4495634 ~ 4500384 (+) | True | tnip2 |
| XM_026933138.2 | mRNA | upstream | 172616 | 4495632 ~ 4499516 (+) | False | tnip2 |
| XM_026933147.2 | mRNA | upstream | 172633 | 4495632 ~ 4499499 (+) | False | tnip2 |
| XM_026942823.2 | mRNA | upstream | 184857 | 4483548 ~ 4487275 (+) | True | scpp1 |
| XM_026944471.2 | mRNA | upstream | 831270 | 3838726 ~ 3840862 (+) | True | hmgb2a |
| XM_034302684.1 | mRNA | downstream | 210552 | 4882996 ~ 4892379 (+) | True | prmt9 |
| XM_034302686.1 | mRNA | downstream | 210552 | 4882996 ~ 4892379 (+) | False | prmt9 |
| XM_034302685.1 | mRNA | downstream | 210552 | 4882996 ~ 4892379 (+) | False | prmt9 |
| XM_026940271.2 | mRNA | downstream | 591138 | 5263582 ~ 5357860 (+) | False | znf827 |
| XM_026940245.2 | mRNA | downstream | 591138 | 5263582 ~ 5356735 (+) | False | znf827 |
| TU47789 | other | upstream | 837521 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 2506348 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 2580826 | 2085465 ~ 2091306 (+) | False | stox2a |
| XR_003404319.2 | other | downstream | 591138 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 646090 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 2531506 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 2976754 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 3793303 | 8465747 ~ 8466312 (+) | True | G42685 |
