RNA id: TU48295


Basic Information

Item Value
RNA id TU48295
length 2088
lncRNA type intronic
GC content 0.40
exon number 1
gene id G40808
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4672663 ~ 4674750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGAAACAGCTTTGCAATACCACAtggtaaaatattttgtgaatgATTAGTATGTATTTTAACACCCTTGCTCAtcaatgtacactatatggccagaggtatgtggacacctgaccatcatacttatatgtgcccattccaaaaccgtGGGCATTAACATGGATTTGATCCCCCACTTTCTGTTGCAATAGCCTTCACTCTTGATAAGATTTTGAAAGATGGCTGTGTTGATTTGCGCTCATTAGCCACAACACCATTAGTAAGGTCAGGCACCGATGTTAAGTGAGAAGGCCTGGTTCAGGGCTCgggccactcgagttcctccagatcaaccttggcaaaccatgtcttttttggagctcgctttgtgcacagtggcgTTGTCATGAtcaaacaggtttgggccctttcGTTCTAGTGATGAGAAATCTAAATGATACAGCTTAgaaaaacattctagacaattgtgtggcaaacagtttggggaaaacccACATATGAAGGTATGAAGGTATGAAGGTCAGGCATCCACATaattttgaccatatagtgtaactatTAATCATAGTCTATGTATTGGCTACTGTAGCTTCAGCTAGTAGCTCCAGTTATCTCCATTCCCACACCATTCAAGTCCTTCATAATGTAATCAACTTCCTTAATTTAGAATCAGCTTCTGCTGCATATCTGCCCATGATGTAGAAACATTCCTATCAGGGGCTGTTTCATGTTAATTTGAATGGAAGTATATGGATGAAGAGTCAGCGTAGATGAAGGTCAAAAGCCTAAGGCGAGATACAGAGGGTAAGACATTAGGAGAGTGGGAGTCAGCTGGGCAACAGGGTCCTGGCTGTGTAAGGTGCGGAAAGTGCCAGGCAATGCTTTTGGACATTGAATGCATTTGTTGCCAAGGGCATGTCCTCATCCTTAGTAGAAAGGTTTCCTCAAGGGTGTGGGTTTTGAATGCTTAAAAGCTTCTCAGAGGTTTTACTTGGAATCTTTTTTGGCGAAGCAAACACTCGGTTCTAAGGTTCTGTGTGGAATCTTAGTAGCTCCAGTTATCTCTATTCCTATGCCAAAGATTGTTTGAGTCCTTAGAAATAGCACCAGCTTCCTTAGTTAAAGAAACAGTTTCTGCTCCATATCAGACCATGATGTCAAAATGTTCCAATCTGATTTCATAGCTTTAGTATTATAAGATTCTATCTGGGAACTGTAAGACTATGGTCACAATTTAACCTTTTCTCTAAAAGTGTGCAGCATTTTGATGCATTTGATTTAACAGAAGGAATAGATATGgtcattgtaaatataaatttaatcaaCAGGTTGCAGGGCCGTGCTATATTTTACCTGTGGTCAAGGCTATAGTAGGCTGTTACAGTCTTTTTTTCTGCAACAAAAGTTCTCCAGGAGGTTGTGTTACAACAAAGGGTTTCCCTATCAGacagggttccaagtagaaccccgCATTTAGGAAGCCACGAGTTCATAATTATGTAAAGAACTATCTCTTGGGCAAAATGGTACTGTAAATATGCCATAAGTAATGGCATGTACTTAAAGGACATCCCTGCAAAGttactgctttacctctgattttTGCAAAATGCtgaacactggagactcattccataaatgccAACTTGACCACAtcaattacacatgtttttaatccattcatGTGGCGTGCCCACCATATAGGTCCATGTGAATTACctgcttctttatttttactacattgagcatgttaatataaacctatgatttgcctCCCAtaacttctgaccaatgagaattgagaattcagcagcacatttgggtaaaattaaatcaataatcaAATTGTTGAAGAGTATTATGTTGCTGCATGgaatatacattaatattactgaaatgttttgtgGTCTTGGAATTATGCCTCATAGACGTCTGTGGGAGGCAAAATGTTAAACTATGTCTGCCTCTAAAACCACACCTTAATACTCTGAACTCTGAATAAATTCTGGTTAACACTGCATCCTCCTCTTAGCGTTCgctttgtttctgtctcttgtCTGAATGGTTGCCTCTCACTTACAACACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48294 lncRNA upstream 219 4672132 ~ 4672444 (+) True G40807
TU48293 lncRNA upstream 762 4671628 ~ 4671901 (+) True G40806
TU48292 lncRNA upstream 1193 4670867 ~ 4671470 (+) True G40805
TU48291 lncRNA upstream 2119 4669754 ~ 4670544 (+) True G40804
TU48185 lncRNA upstream 127580 4542609 ~ 4545083 (+) True G40704
TU48296 lncRNA downstream 218 4674968 ~ 4675474 (+) True G40809
TU48297 lncRNA downstream 824 4675574 ~ 4676784 (+) True G40810
TU48298 lncRNA downstream 2359 4677109 ~ 4678808 (+) True G40811
TU48299 lncRNA downstream 4339 4679089 ~ 4679533 (+) True G40812
TU48300 lncRNA downstream 4785 4679535 ~ 4680011 (+) True G40813
XM_026933131.2 mRNA upstream 172279 4495634 ~ 4500384 (+) True tnip2
XM_026933138.2 mRNA upstream 173147 4495632 ~ 4499516 (+) False tnip2
XM_026933147.2 mRNA upstream 173164 4495632 ~ 4499499 (+) False tnip2
XM_026942823.2 mRNA upstream 185388 4483548 ~ 4487275 (+) True scpp1
XM_026944471.2 mRNA upstream 831801 3838726 ~ 3840862 (+) True hmgb2a
XM_034302684.1 mRNA downstream 208246 4882996 ~ 4892379 (+) True prmt9
XM_034302686.1 mRNA downstream 208246 4882996 ~ 4892379 (+) False prmt9
XM_034302685.1 mRNA downstream 208246 4882996 ~ 4892379 (+) False prmt9
XM_026940271.2 mRNA downstream 588832 5263582 ~ 5357860 (+) False znf827
XM_026940245.2 mRNA downstream 588832 5263582 ~ 5356735 (+) False znf827
TU47789 other upstream 838052 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 2506879 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 2581357 2085465 ~ 2091306 (+) False stox2a
XR_003404319.2 other downstream 588832 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 643784 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 2529200 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 2974448 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 3790997 8465747 ~ 8466312 (+) True G42685

Expression Profile