Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU48300 |
| length | 477 |
| lncRNA type | intronic |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G40813 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 4679535 ~ 4680011 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU48299 | lncRNA | upstream | 2 | 4679089 ~ 4679533 (+) | True | G40812 |
| TU48298 | lncRNA | upstream | 727 | 4677109 ~ 4678808 (+) | True | G40811 |
| TU48297 | lncRNA | upstream | 2751 | 4675574 ~ 4676784 (+) | True | G40810 |
| TU48296 | lncRNA | upstream | 4061 | 4674968 ~ 4675474 (+) | True | G40809 |
| TU48295 | lncRNA | upstream | 4785 | 4672663 ~ 4674750 (+) | True | G40808 |
| TU48301 | lncRNA | downstream | 1709 | 4681720 ~ 4682740 (+) | True | G40814 |
| TU48302 | lncRNA | downstream | 3802 | 4683813 ~ 4684257 (+) | True | G40815 |
| TU48303 | lncRNA | downstream | 5513 | 4685524 ~ 4685762 (+) | True | G40816 |
| TU48304 | lncRNA | downstream | 5936 | 4685947 ~ 4686613 (+) | True | G40817 |
| TU48305 | lncRNA | downstream | 7971 | 4687982 ~ 4688361 (+) | True | G40818 |
| XM_026933131.2 | mRNA | upstream | 179151 | 4495634 ~ 4500384 (+) | True | tnip2 |
| XM_026933138.2 | mRNA | upstream | 180019 | 4495632 ~ 4499516 (+) | False | tnip2 |
| XM_026933147.2 | mRNA | upstream | 180036 | 4495632 ~ 4499499 (+) | False | tnip2 |
| XM_026942823.2 | mRNA | upstream | 192260 | 4483548 ~ 4487275 (+) | True | scpp1 |
| XM_026944471.2 | mRNA | upstream | 838673 | 3838726 ~ 3840862 (+) | True | hmgb2a |
| XM_034302684.1 | mRNA | downstream | 202985 | 4882996 ~ 4892379 (+) | True | prmt9 |
| XM_034302686.1 | mRNA | downstream | 202985 | 4882996 ~ 4892379 (+) | False | prmt9 |
| XM_034302685.1 | mRNA | downstream | 202985 | 4882996 ~ 4892379 (+) | False | prmt9 |
| XM_026940271.2 | mRNA | downstream | 583571 | 5263582 ~ 5357860 (+) | False | znf827 |
| XM_026940245.2 | mRNA | downstream | 583571 | 5263582 ~ 5356735 (+) | False | znf827 |
| TU47789 | other | upstream | 844924 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 2513751 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 2588229 | 2085465 ~ 2091306 (+) | False | stox2a |
| XR_003404319.2 | other | downstream | 583571 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 638523 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 2523939 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 2969187 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 3785736 | 8465747 ~ 8466312 (+) | True | G42685 |
