RNA id: TU48521


Basic Information

Item Value
RNA id TU48521
length 267
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G41015
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5130120 ~ 5130386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaaagctggaaacacacaattgtatagaatgtctttgtatgctgtagaattacaatttcccttcactggaactaagaggctcaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatgaactggaacactgactgcaccccagacctcctcaccaacaccAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48512 lncRNA upstream 50259 5079299 ~ 5079861 (+) True G41006
TU48405 lncRNA upstream 227501 4899491 ~ 4902619 (+) True G40908
TU48357 lncRNA upstream 327985 4792921 ~ 4802135 (+) True G40863
TU48342 lncRNA upstream 347590 4782331 ~ 4782530 (+) True G40854
TU48288 lncRNA upstream 358620 4769658 ~ 4771500 (+) False nr3c2
XR_004577893.1 lncRNA downstream 89107 5219493 ~ 5222775 (+) True LOC117596903
TU48526 lncRNA downstream 94562 5224948 ~ 5226428 (+) True G41019
TU48535 lncRNA downstream 128165 5258551 ~ 5308118 (+) True G41026
TU48544 lncRNA downstream 134515 5264901 ~ 5270195 (+) True G41031
TU48545 lncRNA downstream 139929 5270315 ~ 5322391 (+) True G41032
XM_034302684.1 mRNA upstream 237741 4882996 ~ 4892379 (+) True prmt9
XM_034302686.1 mRNA upstream 237741 4882996 ~ 4892379 (+) False prmt9
XM_034302685.1 mRNA upstream 237741 4882996 ~ 4892379 (+) False prmt9
XM_034302676.1 mRNA upstream 358516 4664316 ~ 4771604 (+) True nr3c2
XM_026940271.2 mRNA downstream 133196 5263582 ~ 5357860 (+) False znf827
XM_026940245.2 mRNA downstream 133196 5263582 ~ 5356735 (+) False znf827
XM_026940255.2 mRNA downstream 133196 5263582 ~ 5356611 (+) True znf827
XM_034303003.1 mRNA downstream 133196 5263582 ~ 5356264 (+) False znf827
XM_026937146.2 mRNA downstream 469499 5599885 ~ 5626477 (+) False si:dkey-27h10.2
TU47789 other upstream 1295509 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 2964336 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 3038814 2085465 ~ 2091306 (+) False stox2a
XR_003404319.2 other downstream 133196 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 188148 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 2073564 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 2518812 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 3335361 8465747 ~ 8466312 (+) True G42685

Expression Profile